RnoINT0132988 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264748414-264748776:+
Coord C1 exon
chr1:264748414-264748574
Coord A exon
chr1:264748575-264748714
Coord C2 exon
chr1:264748715-264748776
Length
140 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
3' ss Seq
TCTTGATTTTCTGTCTGCAGGAC
3' ss Score
10.59
Exon sequences
Seq C1 exon
CACAGCCTCTATGTGGGGGCTGCGAGTGGAGTCATCCAGTTTCCTCTGTCCAGTTGCTCACGCTACCGTTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCACCCATGCCTGCATGGTGGCCACCACCATAGCCAACAG
Seq A exon
GTCCCATGGGACAGGTTGGGAATAGGGATGGGGTACATGGGTCTTAAGTGGAAGAAGAAAGCCCACCAGCCCGTAAGGTATTATTAGTAATCCTGATGCCCAACTCCCGTTGTTCGTGAATCTTGATTTTCTGTCTGCAG
Seq C2 exon
GACAGCATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(65.5=66.7)
A:
NA
C2:
PF0143720=PSI=PD(32.7=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTCTATGTGGGGGCT
R:
CATCCCTGCTGCCCTCACAG
Band lengths:
218-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]