RnoINT0133713 @ rn6
Intron Retention
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8650281-8650600:+
Coord C1 exon
chr3:8650281-8650356
Coord A exon
chr3:8650357-8650437
Coord C2 exon
chr3:8650438-8650600
Length
81 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
GCCTGGTCTGCCTCCTCTAGGCC
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGACCTTCTGTGAGCCTGTCATTGAAAGGAGGCCGCGGCTGCAGAGACAGAGACGCGTTTTCTCTAAGCGGAGAG
Seq A exon
GTACGAAGGGTTCAAACTGTGTGACGAGAGCTGGGCTGACCCCTGGGGATGCTGGGACTGAGCCTGGTCTGCCTCCTCTAG
Seq C2 exon
GCCAGGATTTCCTGAGAGCTTCCCAGATGAACCTCAGCATGACGGCCTGGGGGCGCCTGGTCATGAGCTTGCTACCCCCCTGCAGCTCCCCGAGCACAGTCAGTCCCCCTAAAGGGTGCCCTTCGGCGGCAGCCTGTGAGACCTCCAGTTCTGCTTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892:ENSRNOT00000050528:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCGTTTTCTCTAAGCGGAG
R:
AGCAGAACTGGAGGTCTCACA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]