RnoINT0133716 @ rn6
Intron Retention
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8650908-8652518:+
Coord C1 exon
chr3:8650908-8650975
Coord A exon
chr3:8650976-8652454
Coord C2 exon
chr3:8652455-8652518
Length
1479 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
AGGCCCTTCCTCTCTTGCAGGAA
3' ss Score
10.86
Exon sequences
Seq C1 exon
TGTACCAAGCGCCCCCACATGGACCCTAGAACTGGAGTAGCGCCCCCTCTGGCAGCCTTGTCCACCAG
Seq A exon
GTACTCACTGGCTTCCATTCATTTAGAGACTTTGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTTTTGGTTCTTTTTTTTCCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTTGGGTTTTTTTTTTTAAAGATTAAATGTGCATGTGCGCGCATGTGAGAATATGTGTGTGTGCGTGTATGTGTGTGTGCCTGCATGTGCATACAGACCCAAGTTGAAGTCAGAACACAACTTTTTTTTTCTTTTCTTTTTTTTCGGAGCTGGGGACCGAACTCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAAAACACAACTTTTAACGACTCCTTTTTATTTTATGTTCATTGGTGTTTTGTCTGCATATATGTCTGAATGAGGGAGTCAGATCCTCTGGAAGTTGTGAGCCGTCCTGTGGGTGCTGGGAATCGAACCTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACCTTTGAGCCATCTCTCTAGCCAAGCACAAGTTTTTGGGAGGTGGGTTCTCTGTCTGCTTTGTTTCTGAAGCAGGTTTCGTTATTTCTACTACTGGACTTGCTGCTCATATACATGGACGGCAAGCAGCTTCTCCCATCTCCACCTCCCAATTCGTTGGTAGGAGTGCTGGGGCTGGATGTGGGCCAGCCATTGTGTCTGGATTTTCTTGTTTGTCTTTCTTTGTTCCTCCTCCCCCTCCTCCTACTCCTCTTCTCCCTCCTTTCTCTTCTTTCTCCCCCTCCTCATCTTCATCCTCCTTGTCCTCCTCCTCTTTCTTCTCCTCTTCCCCTTCTTCTTTCTCCCCCTCTTCCTTCTCCCCTCCTCCTCCTTCTCCTCCTCCTCCTTTCTCTGTGTAGCTCTAGCTGTCCTGGAACTCTCTATGTAGCCCAGGCTGACCTTGAACTCACAAGAGATCCACTTGCCTCTGCTTCTAGAGTGCTGGGATTAAAAGTGTGCACCACCACTGCTTGGCTTGCATCTGACTTTTCTTTCTTTTTTTTTTTTCCGGAGCTGGGAACCGACCTTGCGCTTGCTAGGCAAGCCCTCTACCACTGAGCTAAATCCCCAACCCCTGCATTTGACTTTTCTAAAGTGTGTTCCGGGGCATGGAATCTAAGCCATTTCAGTGCCTGAGACTTAGACTTCTTTAAAAATAAGGTCTTACAGCGTAACCCAGGCAGGTTGAACTTGTGATTCTCCTGCTTCTGCAGTCTGGGTGCTGGGATTACAAGTGTGCACCCCCACTCCTTTACATACTGATTGACACCTCACTCCCTAGCTCCTTGGGTATACAAACTGGCTTTCTCAATGTCTTCTTTCTATGCTAAATGTGGTCTTTTAATTCCAGATGTGGGGACAGCCTAGGCCCTTCCTCTCTTGCAG
Seq C2 exon
GAACCCCCCCCAACTTCAGGACTTCCGATGTTTGGCTGTGCTGGGCCGGGGACACTTTGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892:ENSRNOT00000050528:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(5.1=59.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]