RnoINT0134659 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185420323-185422891:+
Coord C1 exon
chr2:185420323-185420381
Coord A exon
chr2:185420382-185422688
Coord C2 exon
chr2:185422689-185422891
Length
2307 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CCGTGCTGTTCTTTGTTCAGAGG
3' ss Score
7.75
Exon sequences
Seq C1 exon
GTTGATATTCCAGAAGGAAGAAGTGGAAAAAGAGAATCATTTTCATCTCACTGTGCTAA
Seq A exon
GTAAGTTTTGTCTGTGTTCTTTTGTACTTTTTTTTTTTTTAAGGAGTTAGCAATGAAGAATTTCTAAACTTAATCATTTCCATTGCATGATTGGACAGATCCTCGGTATCCTTAGTTCTCAGGAAACTTATTTGCTTATAATGTGATAGTGACAGCAGGAGACATGGCTCAGTGATGAGGATGTGTCCTGCTCCTGCAGAGGACCCTGGTTCAATTCCAAGCACCCACATTAGGTAGCTTAAAACCACCAACTCCAAATCCAGGGGATCTGGTGCCCTCTGCTGGTCCTGTGGGTATGTACATGCACAACTTTTTTTTTTTTTTTTTTAATTTTGAAAAAGAAAAGAGAAGCTAGAGAAATGGCTCAGCAGCTAACAGCAAATTGCTGGTCTTGCAGGGGACCTGGGTTCGATTCTAGGACCTATACATAGCCCACAGCCATTTGTGACTCCAATTCCTAGGAATTCAATGCTTTCTTCTGACCTCTGTAGGCACCAGGCCTACATATGTATGGTGCATATATATATTTGAGGTTAAACACTCACACACATAAATGAAAAAATAAAAACATTTTGAAAAGGAAATGCTGTAAGCCGGTAGAAGCCAGCCTAAATAGCCTTCTGCATGCGCAGACTTAGGGGCAGTGGCAAATCACTTTGCTTAGACTTGACCTGACCTGCACGCAGACAGTTTTGCTATCAGGAAGTCTTTAGTGTGTCTTTCTGGTGTCTTTCAGTAGCTTTTTTTTTTTTTTTTGGAACTTAAAGTGCTTTTCTCATGGAAAATATGTCTATCTTATAGAAATATGAATCCTACAAAGAGAGCCAGATGAGGCCAGGGCTCAGCTCAGCGGCTGAATGCTTATCCCATAGAACATACAGCTCTGGGTTCTAATCCCAGCCATGGGAACAAGAATCGGCTTAGTAAACATTTTGTATTGTTTTGTTTCTAAGGACTGGGCCCCGGTGAGGGGAGAGTTAAACTGCAGGATAGCACTCCCTGTGTGTTCCTGTGTTTCTGAGACCTTTTCCGGATTTATGTGCCTTTTATGCCTCACTGTAACTCTTGTGTGATTTAGAGCCCTGCCACCACACAGCTTTATGTTCTAGTTAAATGAGCAAATTAGTACAATTCACTACCTGGTGAAGACTGTAAACCTGTCGTGAATAGGTCAGACATAAGGAGCTGTCCCCAGGGGACGGGAGGAAATAAATGCAAAGGTTATCACAAATAAGGAAAATTCCGGTGCCTCAGACAGCATCAAGTCATTGGCTTCCACTTGAAGTTCCAGTGCTACCCTGAGCACAGACACCGCTCGGGCTCGTTGAATTTCAGCAGGTTTGAATGGCCATTGATCTGCCCTCAGACTTCAGTGAGAATCTGGCTACAGCAGGGCAGCCTTTCCTTACAGGCAGCTGTCTTCTCTTTACATCTCTGCTATTGAAACTTACTTTCCAGGGCTCAGATCAAAGGTTAGGGATTGAATCACACCACAGACCAAGTTTTATCTGCTTGTATCTTATTTTCACTCAAAGTCGCAGCTCATGGAGGATTCCTCCGAGTCTCAGGACTGTACCTTCTTACAGGCAATGTCTTTGCAGAGCAGTGAAGCTGATGGATGAGTGTGTGTTTTGGCTCTCCGGCATCCCGCTCCCTTTGACCTTCTAACTCATCAGGCTCATTGATACGTTCGGCTCCATGGTGGATTCAGTTCATAGCGAGCATCCCCCTGCCTGGGAGATGCCCCTTGTACACTGTCCTCATTCTTGATGCTCTACCCTGAGATTCTCAGGGGAACTACCCTAATCCCAGCATGTCTGTGGTTGAAAGGCTTTAGAGGGGCCTTGGATTGCTTTGGCACAAAGACCCAGACAAATGGAGCCCAGGGAGATTCTGTATTTACATAAGAGCTGATCAAAGGCAGATGTGCAATGTAGACACACTTAACCAGTCAGCTCTGGATCCGGAATGCTGCTGAAGTCTCAGGCCAGGAGGTTGGCCTTTTTTGTGTGACAAGCTTCACCATCTAGAAATAAGCCTTATCATTAAGTGGTGCTGCATACTCTTCTTTGTGGGAGGTTTTTTTTTTTTTTCATAGAAAAAAATATACCTTGCTCCATGGTAAACAGGATATTTATTGAAAGGAGAGGATGGAAGCTGAAACATTTTCTTAAAGTTTCTACTAGAGAGAATTTATTGTGCGTTATGAAGCGTTGCCTAACAGCAGAGCTGAAGGTGACACCAATGACGGTCTTTATTTGCGTGTGTGCGCTTGTTTAACCCGTAACCGTGCTGTTCTTTGTTCAG
Seq C2 exon
AGGCCAGAGGTGCATCGCTCGGTTTGAGTATATCGGAGACCAGAAGGATGAGTTAAGTTTCTCAGAAGGAGAAGTAATCGTTCTTACAGGGTATGTGAATGAGGAATGGGGCAGAGGAGAGATTCGAGATCGAACTGGGATCTTCCCCCTTAACTTTGTGGAACTTGTCGAGGATCACCCCATGTCTGGTGCGAATATTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146041=SH3_9=WD(100=71.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]