RnoINT0134662 @ rn6
Intron Retention
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185425317-185425965:+
Coord C1 exon
chr2:185425317-185425503
Coord A exon
chr2:185425504-185425867
Coord C2 exon
chr2:185425868-185425965
Length
364 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
ATATTCTTGTGTCTTTGCAGCTG
3' ss Score
11.53
Exon sequences
Seq C1 exon
GATAGCAGCCCTCCTGGAGAATGGTGCAGAGCCCTCCACAGTTTCACAGCAGAGACCAGCGAGGACTTAGCCTTCAAACGTGGAGATCGGATCCTGATCCTCGAGCGTCTAGACTCTGACTGGTACCGGGGCCGGCTGCATGGCAAGGAGGGCATCTTCCCAGCAGTGTTTGTACAGCCCTGCCCAG
Seq A exon
GTATAACAGCTGCTAGTGTGACCTACTTCAAGGGCTAAGGCTTTTAAATTGTGTATAGGCCTTTACCTCTGACCATGCTTGACTTAAGTTTATCTACATCTGGAACAGATGATTAATGAAGTCACTACATCAAAGTTATGTGGAGGGGAAAAGATCAAGGTATCATTGAATAGCAGCTCAGTTTGACTAACAAGTAGACTTTGTACAATTTTTTTGTCCTAAGTGAATATCCTTTAACTTTTTGCAAGTTAAGTAAATTCAGAACTACTTGTAAATATTTAGAGGAAGACAAGGCAGGTTCCTAAGGTGTTTGTGTTTTGTGTGACCGTCTTGCTGCATATTTGATATTCTTGTGTCTTTGCAG
Seq C2 exon
CTGAGGCAAAAAGTGTGGCTTCCACAATGCGGAAGGGGAAGAAGGTTAAAGCCCTGTATGATTTTGTTGGGGAAAACGAAGATGAACTCTCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752:ENSRNOT00000015802:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=WD(100=73.0)
A:
NA
C2:
PF146041=SH3_9=PU(30.6=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGCAGCCCTCCTGGAGAA
R:
GAGAGTTCATCTTCGTTTTCCCCA
Band lengths:
278-642
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]