RnoINT0137099 @ rn6
Intron Retention
Gene
ENSRNOG00000027522 | Slc25a54
Description
solute carrier family 25, member 54 [Source:RGD Symbol;Acc:1583925]
Coordinates
chr2:211922117-211925681:+
Coord C1 exon
chr2:211922117-211922264
Coord A exon
chr2:211922265-211925332
Coord C2 exon
chr2:211925333-211925681
Length
3068 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TATATTTTTTTAATTTATAGCCA
3' ss Score
7.18
Exon sequences
Seq C1 exon
CTTCTGAAGAATTACTGGCTAGAACACTATGCAGAAAGCTCCGTGAACCCGGGGTTAGCAATTGTGCTGGGTTGTAGCACACTGTCGCACACTTTCGGCCAGTTGGCCAGTTTCCCCCTGAACCTTGTTAGAACTCGCATGCAGGCAG
Seq A exon
GTGAGTTTATTTTATTTTTTTAAATTTTTTTATTTTAGTTTAATGAAGTCATCACTGAGGTAAGAAATATGTTTTAAATAAGTATTAACTGATAATTTTAAAGGCATACAATTGAAAATGAAGAAGCTAACCAATTTAAAGCACTTTTAAGGGTGTATTTATTTACTTATTTTATGTGTATGAAAGGGTTGCATGCATGTATCTACATGTACTACATACATGCAGTTCCTGAAGTAGACAGAAGAGGGCAGTTAGATCCCAAGGAACTGCAGTTGTAGATGGTCATGTGCCTCTACATGGGTGCTGGGAAATGAACCTGGGTCCTCTGAAAGAGCATCAAGTACTCTTAACCACTGAGCCATCTCTCTTAGAACCTTTTGTAAGTTTCAATTTTCCTTTTCTTCCAAAGTCCTGTCTGGGGCTCTCCACATTTGCTTCAATTGTCTCTTTAAGGAGATTTTAATTAGGAAGGGCCATGTAGAATAATAGAAAAAACTTGCATTCTTTAAATCAAACCAACAGCTAATCTACAGAGGCTCATTATCCTTGGTTTTGCTGGCACTGCTGTAAGCTGCTTCGGGAATCTCTGTCCTTTAGTCTATTCAGTGAAATGATGGCAAATACTTTGTGTTTTGTTTTTCTCGATGAAATGTTAAGGATTTAAATTTTAACAATTTTTTAGAGTCACTTTTCAAAGATGAAAAAAGCAGCACAATGTTATTATTGTCTTCCTGAGTAGATCAAGAGTCTCACGGTGGGTAATGTGCTTTTACTTTCTCTCTCCCTCTCTTTCTCAATTAGGCTTTGTGTTTGGTTTATATCACACTCGAGATGGAGAATTTCTCTCTCCAGTATCACTCATGCCTTCTATTAATCTACCCTTTAGTCTTTCTTCCAAATGCCTCTGTGAAGTCTCTCATGAGAGACTTGCAAGTTGTTCTAAGGAACTGGAAGGAGTAGTGATGGAAACCATTTATATCTGTTCTGCCCGGTATAGTAGCCACCCATTATATCCACACATATCAGGCATTTGAAATGTACTAATATTACTGAGGAGTGGAGATTTAATTTAATTTTAATTAAATTTAAATAGCCACACGTATACATGTGTGGTGGTTCAAATAAAACAGCCATCATAGACCCATAGGAAATGGCACTATTAGGAAGTGTGGTTTTGCTGGAGTAGGTGTGGTTTTGTTGGAGGAAAGGTGTAACAAGTGGGTAGGCTTTGAGATCTCAGAAATGCATGCCAGGTCTACCTAGTGGCTCACAACTCTTCCTACTGCCTGGAAATCCAGACATAGATCTCCCAGTTTCTTCTCCAGCACTGCTTGCTTACATTCCCCATGCTTTCCACCATGACTATAATAGACTAAATCTATGAAATGGAAGACAGCCCCAACTAAATGCTTTTCTTTGTAATAGTTCTGTGGTCATGTGGTCTCACAACGATAGAAATCCTAAGGCAGAAGTTGGTACCAGGAGTGGGGAATTGCTGTGATAGATCTGACAATGCTTTTGTTTGGAGGAATGTATACTTTGATTTAAAAAGATGTCAAACATTTTAAATGGGCCGTAATGGGCTATACTAGATGAGCACGGAAGGCAGTGGTGCTGAGGTTGATTTGAATGGTGTGAGCCTGGCTCGAGAGGTTTCAGAGAAGAAGAATGTGGCCTAAAGACTATTGTATTGTGATATTTTGATGAAAAATGTGGCTGCTTTCTGCCCTTGTTCAAAAAAATAAAATCTGCCTCAGGCTAAATAGAAGAGTTTTGGACTAACTGCATTTGCAGAGAAAGACTTCAAAATAGTCTGTATCTATATGTGGGCTGTGTTATATGGCTATTAGTGGCCACACTTATGCAAATCTATAATGAAAAGGAGCAGACTGAGCAAGGAAAGTTACAAAGATGTACAATTTGAGGAAAAAGGGGGCATCAAAAAGTGGGGCTAAGTCCTGTGTTTAGGGAGATAAACAGATTAAAGAAAATTCTGATGTTTAATGAAAAAAAGGTAGTGGTGAGCTCAGAGCAAGATCCCACCCAACTAAGCTTTCAATTGTGACAAGGAATTAAATGAAAGCTTACAGCCAGATGTGGTGTTGCATGACTTTAATCCCGGAGGCAGAGACTGGCAGATCTTTTAAGTTTGAGACCAGCCTGGTCTACAGACTGAGTTTCAGGACAGCCAAGCTTAGGTAGTGAAGGAAACCATTGAAAACACAAAACTAGAGAAGTTGGAGTTGAACAAGGAGGCCATGTTGCAGCCCCAGCGAGCAATAGAATGTGGCAGCTTTGGTCATGTGGTTCTGACTTTAGAGTCAAGGATAGAAAAAGGGGTTACGGAATCTTCCTCCAAGACTAAGGAATACCAATGAAGCCAGGCATGTGGCGGTCATGTTCCTACACAGAGGCCTAGAGAGGCCATTGTTTGAAGCTGTGAAGGTGAAGCTTGCATTTATTGCCTTGGAGACTCCAAGATGTTGGAGAAGCCAGGGCTGTGGGATGTCTGCTGAGGAAGCTGCTAATAGGGAGTGGAACCAGCCCAAGAGAAAGAAGTGCATTGGAGACAATGTAGGTGAAAGGAGTTGGAGGTCTGGAGAGCACTTTGACACCTGACATGGAGATGCAGAGTTTAGAGTTTGACCAGCTGATTTTCAGTCTTACTTTGGCCCAGTATTTCCTCACTGAGCTCTCTCTTGAAATGTCTATCCTGTGCCTGGAAGTATGCAATGCCTTTTGATTTTGATTTTATAGGAGATTACGGTTAAGAGATTGTACGAATCTCCAAAGAGACTTCGTACTTTGGACTTTTAAATAGGTTTGCAACTGTTATAAACTATGGGGACCTTTTGAAGTTGTACTAAATGCATTTTGCATTATGATATGACTACAAGCCTATGGGGGCCGGGGAGTGAACTGTGGACACTACCCTATTGATGTATAGGATCCTTCTATATATGAGTATCCTGTGAAATGATTTCAACTTCTATAAGTTCTCATTATCTTTGGCTAGATTGATATGTAAATATTAAATGATGAGTTATATATATTTTTTTAATTTATAG
Seq C2 exon
CCATGCTGGAAAATGAAACAATACCCATGATGCAGCTCATCCAGGAAATATACACCAAAGAAGGGAAGAAGGGATTTTTTAGGGGTTTAACCCCTAATGTCCTCAAGCTGCTTCCTGCAGTGGGCATTGGCTGTGTGGCTCATGAACTAGTGAACTTGCTTTTTGGACTAACTTAGAAGTGGAATAACAAACTGTCATCACTGCCATAATCACTAAGGTATAAGATAATACCTGGGTTATAAGGTGACCTTACTTTTTCCTAAAAAGAAAGAAATATCAACTACTTGTAAAATTACTTTGTCTTTATTTATTATAAAATATACAAACTAAATGGTAGTTTTGGCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027522:ENSRNOT00000038315:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(37.4=68.0)
A:
NA
C2:
PF0015322=Mito_carr=PD(61.5=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]