RnoINT0137305 @ rn6
Intron Retention
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8370565-8371623:+
Coord C1 exon
chr3:8370565-8370656
Coord A exon
chr3:8370657-8371513
Coord C2 exon
chr3:8371514-8371623
Length
857 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CCAGGCCCCTCTGACTTCAGGAA
3' ss Score
6.63
Exon sequences
Seq C1 exon
GTATTACCGAATGGCTGCCCTGGTGTACTATGGATTCCGCATGCGGCCTGATGACATTGTCTATGACTGCCTCCCCCTCTACCACTCAGCAG
Seq A exon
GTAACCCTGGGCCTGCCCGTAGCAGCCAGCTCCCTGTGCCTTTGGAAGCCTCACTTTCCTAGCCACTTACAGGAAACGTGGGAGCTCAAATCTGGGTTTAGATTCAGGCAGGGCCATCGACTGACTCCAACCATAGTCTTGTTGCCCACTGATGATGATATGAGGTTCCTGGCAGGGGTCAGTATCCTGGAGGGCATCTTGCGTGCTGTGTCCTGAGGTTGTTTTCGGCAGACACATAGCGTTACTGCTTGGTTATAGGAACAAGGGAAGGTAGCTTGACATCATTCTGACCTCCAAGACTTTAAGAAGGTCTCTTTGGAGCCGGGCAGAGTTATGGCCACTCCACACCACAGAGCCGGTCTGTGTTGGGAACCTACCTGACACTCAGGAAGAGACGACTTAGAAAAGGTAGGAGGGGTCACAGTGAGGAAGCACAAGTGTCACACACAGGAAGACCAGTGGTGGGGGCTGAGAAGACCTAGATGAAACATCCCAGGTAGGAAAGCAGTCATATCTGGTTGAGTGGCAGCTGTGTAGGCAAAAAGTGTGGGTTTGATCCTACAGGCACTGTGGAGACATGGCAGGTAGGGAAGAGGTGTGGCCAGTTAGCAGGACAGAACAGGAGGAGACTGAGGAAGGGCCTGTGAAGAGGCAGGACTGGAAGCTGGTTGTGGCAGTGAACCCCTATAATCTAGCACTTGGGAAGTGGAGGTGGAGGTCTATCTTCTACTACACAGCAAATTTGAGGCTAGCCTGGACTATATGAGACACTGTCTCAGAAGAGGCAGGCCTGAATGAGAGGAGGGAGGCTCTGGGTTGGGTTCTCTGTCCTAATCTCCAGGCCCCTCTGACTTCAG
Seq C2 exon
GAAACATTGTGGGGATTGGCCAGTGCGTACTCCACGGCATGACTGTGGTGATCCGGAAGAAGTTTTCAGCCTCCCGGTTCTGGGATGACTGTATCAAGTACAACTGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369:ENSRNOT00000019500:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.9=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTACCGAATGGCTGCCCT
R:
TGTGCAGTTGTACTTGATACAGTCA
Band lengths:
202-1059
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]