RnoINT0137479 @ rn6
Intron Retention
Gene
ENSRNOG00000022274 | Slc2a8
Description
solute carrier family 2 member 8 [Source:RGD Symbol;Acc:620611]
Coordinates
chr3:12028085-12029403:-
Coord C1 exon
chr3:12029197-12029403
Coord A exon
chr3:12028185-12029196
Coord C2 exon
chr3:12028085-12028184
Length
1012 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CTAACCTTAACCACCAATAGGTC
3' ss Score
5.25
Exon sequences
Seq C1 exon
GCCGTCGTGACCCTGGGCGCTGCGGCAGGGGGCGTGCTGGGCGGCTGGCTCCTGGACCGTGCAGGGCGCAAGCTGAGCCTCCTGCTCTGCACCGTGCCCTTCGTGACCGGTTTTGCTGTCATCACCGCGGCCCGGGATGTGTGGATGCTGCTCGGAGGCCGCCTCCTCACCGGCCTAGCCTGCGGAGTCGCCTCATTAGTGGCACCG
Seq A exon
GTGAGTGGTTTGGGCTTCCTAGATGATCTTCGCCAGGCAGGGGCAACAGTGAAGCTATTCCTCACTGACCTTGGTTGTGCCTCTTTTACTCTACTAATAGTGGTGTCCCTGTATGCTTAGCAGCGATAACTGGAATGCCCCTATTCTCGTGTTAACAGCTCTGTTCTGGGTTGTCCCTGGGATATCCCTTCACTGCTTGCAGCCACGGCTGCATATACTTTGCAGCCCACACACCTGGATCACTTACCTGGACACAGGCCTCTCTCCCAGCCTCAGTTTGCTCCCCTTAAAGTAAGGCCGAGTCCTGAGGTGGTTTGCTGGTCCAGGAGTGGTCCCTGGAAAGATTTAGACCCAAGTAACTGAGGATCGCCAGCAACCTGTGGCCACACACTCGGATGACCCCCCCCCCCTCCGTGGCCTCCTGCTTCTCCTCTCTTCACCTGTTGGAGGTGTGAAGGAGTTAGAGGAAAGGGAGACTGGAGATCTGCATGGTTTTGTTTTTTTTTTTTAAACGAGGGCATAAGGTATGGAATAATCTAGAAGTATGTATGGATAACGCCTGGTGAGTCCTGAGATTAGAAGTAATGGCTCCCCTAGTAGGATTAGGCTGAACAAGTTAGTGTCCCAGACTGGAGTCAGCCCGTTTTAACTCACATCTGTGCATATGAAACGTGTGCTGTGCTGGGCCTGGTGGCACATGTCCGTAATCCCATAACTTGAAGGTAAATGCATGAAGACCAGGAATTCAGGGTTATCCTCAGCTCAGGAGGCTAGCCTAGGCTTCATGAAACTCTATCTATAAATGAATAAATAAATAAATAAATTTTTAAAACGAGTGTAGGGAAGGAAGCTCTGCACTCCTCTCAGTGCTCACGCACATAGTGGCAACCCATTACCCACAATCCTCTTTTAAAATCTCCAGGAAATGGGGCAGGGCACTCTGCTGACCCATAGCAGGGTTAAACCTTTCCATTAGAAGAGCCAAGTAAAGTCTAACCTTAACCACCAATAG
Seq C2 exon
GTCTATATCTCGGAAATCGCCTACCCAGCCGTTCGAGGACTGCTCGGCTCCTGTGTGCAGCTGATGGTTGTCACTGGCATCCTCTTGGCCTACGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022274:ENSRNOT00000022327:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(15.2=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(7.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGGACCGTGCAGGG
R:
CACGTAGGCCAAGAGGATGC
Band lengths:
255-1267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]