RnoINT0137611 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60259754-60260086:-
Coord C1 exon
chr14:60259970-60260086
Coord A exon
chr14:60259879-60259969
Coord C2 exon
chr14:60259754-60259878
Length
91 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GTTCTATGCTTTCTCAACAGGTA
3' ss Score
11.21
Exon sequences
Seq C1 exon
ATTTCCCCTTTCCCTTTGCCTGGCTGACTGGCTACCTGGCCATCCTTGTGGGGGCAGGCATGACCTTCATAGTGCAAAGCAGCTCTGTGTTCACTTCTGCCATGACGCCACTCATCG
Seq A exon
GTGAGGTTTTGTCCCTGCCTTCATTGGATCACCATTGCCTCTTCCCATGATTACTTGGGCTCATTCCATGTGTTCTATGCTTTCTCAACAG
Seq C2 exon
GTATTGGGGTGATCAGCATCGAGAGGGCATATCCACTCACGCTGGGCTCCAACATTGGCACCACCACGACTGCCATTCTGGCTGCCTTGGCCAGCCCAGGCAACACATTGAGGAGTTCCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(27.7=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAAAGCAGCTCTGTGTT
R:
AGGGAACTCCTCAATGTGTTGC
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]