RnoINT0137612 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60256712-60259878:-
Coord C1 exon
chr14:60259754-60259878
Coord A exon
chr14:60259214-60259753
Coord C2 exon
chr14:60256712-60259213
Length
540 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TCCTACCCTCTCTGTTTCAGATT
3' ss Score
12.11
Exon sequences
Seq C1 exon
GTATTGGGGTGATCAGCATCGAGAGGGCATATCCACTCACGCTGGGCTCCAACATTGGCACCACCACGACTGCCATTCTGGCTGCCTTGGCCAGCCCAGGCAACACATTGAGGAGTTCCCTCCAG
Seq A exon
GTCAGCAACTGCTACTGGGTTCTGAGTGGGTTAAAACGTGTCTGGTTTTACAGAACAGTGTTTTTTCTGTGTTTGAGTCGGAATCACATGAAGCCCATGCTGTCCCCAAACATATTAGGAACGGCCTTGAGAGGTCCTGCCTCCTGGGCTGGCAAGGGATGGGCAACACTACCATACCTAGCATGCAGACTATTTTCTAATGAGAGCCATGCCCTCTGTTATATCCATAAGGGAGAACTAATACTGGGTGAAGCCATGGGGAGCTGTGAATGAGGAGCTATGGGTTCCTAAGAGGTGGGCATGTAGAACATCTACTCTGCTATGAGGCAATGGATGAAGCGGCAGGCAAAAGCCATGTCAGATGACACCGTTAGGATCTGAAGGCTGAGCTATTCAGTGGGGTTGCTTCCTTCTTTCCTGATCTCTAGACAGTAAAGTGATGTGTGTTCCCAGAATATAACGCCCTGAGCCAACTTGGTTATACTATACACAAGGAAGACTATGGGTGACCTTTATTTCTTCCTACCCTCTCTGTTTCAG
Seq C2 exon
ATTGCCCTGTGCCATTTTTTCTTCAACATCTCTGGAATATTGCTGTGGTACCCAATCCCATTCACCCGTCTGCCCATCCGTCTGGCTAAAGGCCTGGGCAACATCTCTGCCAAGTATCGCTGGTTCGCAGTCTTCTATCTCATCTTCTTCTTCCTCCTGACCCCGCTGACAGTGTTTGGCCTGTCCCTGGCTGGCTGGCCAGTGCTGGTGGGCGTGGGTGTGCCCATCATTCTGCTGATCCTCCTGGTCCTGTGCCTCCGGATGCTGCAGGCCCGCTGCCCTCGCATCCTGCCCCTGAAGCTCCGGGACTGGAATTTCCTACCCTTGTGGATGCACTCTCTGAAACCCTGGGACAACATCATCTCCCTGGCCACCTCCTGCTTCCAGAGGCGCTGTTGCTGCTGTTGCCGTGTGTGCTGCCGTGTCTGCTGCATGGTGTGTGGCTGCAAGTGCTGCCGCTGCAGCAAGTGCTGCAAGAACCTGGAGGAGGAGGAAAAGGAGCAGGACGTCCCAGTCAAGGCTTCTGGGGGCTTTGACAATACAGCTATGAGCAAAGAATGCCAAGATGAGGGCAAGGGCCAAGTGGAAGTTCTGGGCATGAAGGCCCTGTCCAACACTACAGTGTTCTAGGAGCACCTAGGAGTCAGGGGTGCCTCCCTCCCATAAGACAGAACAGAGATGTAGACTGTGAACATGGCCCACAGATGACCACATCCACCCATGGCCTATAATGCCTTCAAAGTCCATCCTCACCCAAAGACATTAAGAGGGAGGCATTAGGGAAGGTTCTGGAAAGATCCAATGTAAAGAGTATTTGTAAATATATGTACAAAGCAGTTGTTTCTTGGTATAAAACCTCAGCCACATCTCTCATTTTATAAGTCCACTCCTACCCAATAACTTCTCCTACTCACCCCTGCCCCAGAGCAGCCAAGTTCAAACACACTGAATGTTTGTAGCCCATAGGTGTGAGCCTTTCTAGCTCACACTGCAGGGCATGTTCTATTAAGGCATCGTCTGGTATAGTCAGGCCAAGCAGCTGACCACAGTGTCCTCTGAAGTCCGTGGTGCTCAGCTTCCTAGGATGGAGTGAATGGGGTTCACGACGTGTTTGGCACATTGTTGGTTTTTCTATGCCTAGGGCTGGACTAGAATAGGAGACATTGTTGCTACATATTTCTGATGGAACTTGTAAGACCTGTGTCCCAGGCCTTCTCTCCATTGCTACTGCCTGGGTCATCTGCTGGTGAAGGGTCTGCCTATCTTTCTCTTTTGTGCAAGGAGACTTTCCGGGCCAGCTTTTCATGCTCTGTTTCATCCACCCCCTCACCCTCCTGCTCATGTATTCATTTCAAACCCATCGTCTTACACAGATGAGCTTCCTACCCCTTCCATGCCTACAAAGTTCCAAGGGATTGCTTAGGAGGGAGGAGATGGGAAATGGCTAAAATGCCCTTAGAATCAAGATGAAGCCAGTAAGTAGGGTTGGGAGTGTGCATGTGGGAGCCTGTATGGCACAGGATGCCATAGTCATACGCTGTGCTCATGTGCAGTCCCCATGGTGGCTCTGCAAGCATTCCCATCCCATCCCCCTCCCCACAAGAACGGGCCTCAGCTTGACTTGGGTCAGGCTGTGTGGTTCCACGGCCATCCTCTTCCATCATACTGCATGGGAAGAGGCTGAGGGCCAGCCCGAGCCCCTCTGTAGATAAACGTTCCCCAAGAGCCATTTATGCGGCATAATTTATAGCCATGCATCTGTACAGAATACTTCATAACTTATAGTAAATAGTGACTTGTTTTATAGTGTCTCATTTGGAAATGAGGCAGGGTTCTTTTATGTACTGTGAACAGAAAGAACACCTTTGTATATTTTGTAATACTGCCTTTAAACACAACTCTCGAGGTCATGCTACACCTCCCCCTGTAAATATGTAAGGTACACCCCAGGAAGTGGCTTTGCCCTCTGTTGATTACTTTTTTTAAAAAAAATGGGATCTTTGTTTCTGTGTTAATTGTATTTTTTTAAAACGGGTTGAGGGAAGGGAGAAATACGCACCCCCGCCCCCAAGTACTGCTTCCAATTGCAGGGTGCTGTAAACAAGAGAGGTGTATTTCCTTACTCAAACCTCACCATACACCACCATGGGAAGCTGTAGTTTTTGGGGTTCCCAGTGACACTGGGACACAGAGAGGACTTAGTCCCACCTTCACTCAGCCTTCTCTTTCCCTGGTCTTGTGGACTAGCTACTGAGAGCTATGCTAAGTAAAGCATAGCATTTTGTGGTTAATGAATCTTACCGGGTTTGGAAGCTGATTTTTGAAGCTGTATGCAGGTTATCTTTTCAGTCTTGTTTTAAAAATCAATTCCACCTGTAAGAGAGAAGGGGAGGGGGGCAGTGAGTGGGATGTAAAGTGAAAAAGAAAAATAAAAAATATTAATTCCAATATGGTAAATTATGTTAATTACTTATTTGACTTGGACACCAACAAAATGTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(29.1=100)
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PD(22.7=15.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCGAGAGGGCATATCCA
R:
TCAGCAGAATGATGGGCACAC
Band lengths:
349-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]