RnoINT0138499 @ rn6
Intron Retention
Gene
ENSRNOG00000003134 | Slc4a4
Description
solute carrier family 4 member 4 [Source:RGD Symbol;Acc:68936]
Coordinates
chr14:20512545-20514920:-
Coord C1 exon
chr14:20514807-20514920
Coord A exon
chr14:20512707-20514806
Coord C2 exon
chr14:20512545-20512706
Length
2100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTTATTTCTTTGCTTTAAGCCA
3' ss Score
4.9
Exon sequences
Seq C1 exon
GCAAGAAAACTGATCAGCGATTTTGCCATCATCCTGTCCATTCTCATATTCTGTGTAATAGACGCCCTCGTCGGTGTGGATACTCCGAAGCTAATTGTGCCAAGTGAGTTCAAG
Seq A exon
GTGAGCGAGTGCCTCTTTTGCTTGTTGCTCAAACTCTGTGCCTCTATCTTTTCCTTTAATGTGGTTTGCTGGGAATTCAGTCAGTTTTGTGTAATTACCCATTTTCCCCTCAAAGCAGTCCCCTGTGAGGCTCATTTACAGATAGTCTAATTTCTTCACTAAAATTAAATGCCACAGTTAGGATCAAATTCAGGATGTGGGTTTTATTGACTTTCATTTTCAGATAGCATATATAGTATTGATGAACTCTGCCTTGTGTATCTCAGAATATTTCAGACACTCTTACAGACCTAATTGGCCTGATTCATGCAGCAGTTCTGAGAAGTGCACACAGAGCTAGTATTGTTTGTTTTATAATCTACTAGTGCTCACAAAATTTAGGCAAAAGGTCCATTACTTCTTAACTAGTGATGGCAGGCAGTGAAGTTAGAATTCAAGCCTTCAAGCTCCAACTTAGTGGTCCTTGCCTCCTACCAAATTATCTACCAGGAACACTTATAATACAAAGCTTAATTGTTCAAAGAGAACAAAGGAATTATGTATTTTCTGGAATTAATGTGTATATAGGCGTAATGTATAAAACTTATGTGACGTGCATTCATAATTATATACTTATGAAGCTTTATAATTGCAAAACTTTAACCTATTTTCTAGAAAAATCCTTACTCTGTTCTCTCCACTATTGAGATAATAATGTCAAGCGCTAGTAAGCTGACTGCGGTGTCATATAACTATGAGAGGGGATATGCATGGTACACACACATGCACATACATGACAGTAAAGAATATCTCTGGCATAATATCATATTCATCAGCAAAGGTAAATTCTAGTTGATTCCATTACTAATCCATTCAAATCACCGTTTTTTTCTAAGTGTTTGCTTGGAGGCAGTCTCCATCCTGGGGGATGGGGATTGAAATGCTTTAATGAGTAAGATTAGGTGTTTTGCCTTACAAGCTCACAATGTGTGATACAGGAAACATGAGGATGGGTTTTCTTTCCCTGGTGGAGTTTTGAGCAAATTGAGAGGGAACATGCATCCAGGGTTTTTGGCTTATGCCTACCAGCCCAGAACTCAGGAGACTGAGGCAGGAGGATTTCTACAAGTTCAAGGCCAGTCTGGGTTACATAGGGAATTGGAGGCCAGCCTAAGCTATAGAATAAGACTCTATCTCCTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTATTCTTCCAGAGGTCCTGAGTTCAAATCCCATCAACCATATGGTAGCTCACAACCATCTGTAATGGAATCTGATGCCCTCCTCTGGTGTGACTGAAAACAGCTATAGTGTACTTATACATAATGAACAAATAAATCTTAAAAAACAAGACCCTATCTCCCAAAAAGAAAAAAAGAAAAAAGAAAAACACAAAAAAGCAAAACAACAAAAAAGAAGACCAAACTCATAAATGATATATTTATGCCTATTTGCTCTTTTAAGGTAAGAAATAGCATAGAATTCTCTCTTTCTGTAACAGACATGTTTGATCCCCTGACAGTCAGAGAATAAGAATTTATCTGATTTTCTGACACAGTTATGGGCATTTAATGACTTCTGGATAATTTCCCTGTGTGAAGTAAGAGATCTGAATACTTGGTTCAGGTATAACATGTAAAATAGTTTTTTATGTGTCATGGAGTCATTTATTTGGCAGGAGTAGAAACAACTATTATTAACTGTGAAAAATCAAACAAATCTGTGGTGGCTTCGTAAATTTTTTTCTACCTATTCTCAAAATATTACATTTGAGATTTATTTCCGTGTCTCTTAATGTTAAGTTTTTCCTTTTCTATCTGATACCTTATCTCAAATAATTTCATGTATTTAAAAGATCACTCCCTGTTGTTTTCAATAGCCCATATTTTGCATCTTTTTTTCCCTTTTCCTTTTTTAGCAACCATTTCAAAAATAACGTCTTTTGGGACAGCTTTTGTTAAATAATCTTTTTCTCCAGACTACAATCGTTTCTACTTTTTAAAAACGTTACCCCTCCAAAAATGAAAATTTTAAACCATGTAGCATATAGTAACACTGTTCTGAAAAAGTTTATTTCTTTGCTTTAAG
Seq C2 exon
CCAACAAGCCCTCACCGGGGTTGGTTTGTCCCACCCTTTGGAGGAAACCCCTGGTGGGTGTGCCTTGCTGCTGCTATCCCGGCTTTGCTAGTCACCATCCTGATTTTCATGGACCAGCAAATCACGGCCGTGATTGTGAACAGGAAAGAACATAAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003134:ENSRNOT00000004391:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(7.1=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]