RnoINT0144280 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7245321-7245862:-
Coord C1 exon
chr16:7245726-7245862
Coord A exon
chr16:7245437-7245725
Coord C2 exon
chr16:7245321-7245436
Length
289 bp
Sequences
Splice sites
5' ss Seq
TCGGTATGG
5' ss Score
7.88
3' ss Seq
CTGCTTACCCTCTCTCCTAGCTA
3' ss Score
6.69
Exon sequences
Seq C1 exon
GTGCGGTCTAAACGCTGTGACATCCACACCAAGTTCATCACTCACACCCCCTGCACCGCATGTGCCGCAATTAGGAGGCGGTTATGTCCCTCGGGCTGGTCTCGGAATTTCCCAGAGAAGATACTTCTGGACTGTCG
Seq A exon
GTATGGGCCCACCCAACCGCTTCTTCCCACCTTCAGGAGGGGGGGGGGGTCAGAGGAGCCTCACTGACCCCGGGGGAGGGGAGCAAACAAAATGTCCTTAATGCACATACCTGTGGTGCCCCCCTACAGAGCAGGAGGCACAGGAAGGGAGGAGGGGTGTTTCCCGGCCACCTACTGTGCGCTGGGCCCGGAGCTCAGCCCTGGGCTAGGTGGATGGGATAAGACTCCTGGATTCAGTGTGAGGAGGGTGACGTCCACCACCCCACCGCCTGCTTACCCTCTCTCCTAG
Seq C2 exon
CTATGAGTTGCAGCTCAGGGGCTCTGTGGTATCCTTAAGTGGCTGTAGCCAGGAGTGCTGGAAGGACGTGGTACAGAAGGCCTGCTGCCCCGGCTACTGGGGATCCCAGTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGGTCTAAACGCTGTGA
R:
GGGATCCCCAGTAGCCGG
Band lengths:
244-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]