RnoINT0144298 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7231406-7231895:-
Coord C1 exon
chr16:7231839-7231895
Coord A exon
chr16:7231490-7231838
Coord C2 exon
chr16:7231406-7231489
Length
349 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTGTGTCTCCAATTCTAGGAC
3' ss Score
11.7
Exon sequences
Seq C1 exon
GAGAAATGTGTAAACTGCACCCGGAAATTCCGCTGTACTCAAGGCTTCCAGCTGCAG
Seq A exon
GTGAGGCCAGGCTCAGTACAACTCTGGACTTACATCCTCTAATACCCCCAGTCTCCCCAACACCTTCAGGTCTAGCCCAGCCAGCAACTAGCCTATTCTGGACAGTTGCAACCACCAGTTAAGGCTGGATGGCAGCCAAGGTTTGCTCAGAGGAACCTCACCCAAACCTGTAGCCTCAGGCCTGGTTCCTTATCAGACCCATGGGCCTTGGTCTCTACCTCTCCCTTTCTTTGTCTTCCTCACTCTGTCCCACGCACTCTGATACTTGTAGCACAGTTGTTTCCCACGCACCACGTCCTGACTCTGCCCAGGTTACCAGATGACCCTTCCTCTGTGTCTCCAATTCTAG
Seq C2 exon
GACACACCAAGGAAGAGCTGTGTCTACAGATCTGGGTTATCTTTCTCCCGGGGCTGTTCCTACACATGTGCCAAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]