RnoINT0144304 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7229967-7230281:-
Coord C1 exon
chr16:7230205-7230281
Coord A exon
chr16:7230093-7230204
Coord C2 exon
chr16:7229967-7230092
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CTCACAACATCTGTCCCTAGAGG
3' ss Score
7.22
Exon sequences
Seq C1 exon
CTGCATACAGGACTCTGCTGGAATCCCCGTGTGTGTCTGTGCTGCAGGATACTCAGGCAATGGCAGTTACTGCTCAG
Seq A exon
GTTAGTCCTGTGGACATCCTGGGCTCCGCTCTGAAATGCATGGGATGGCTGTGCACCTTCTCTCTAACCTTTCCTTTATCCCTCTGCCTGTTCTCACAACATCTGTCCCTAG
Seq C2 exon
AGGTGGATCCCTGTACCTCTGGCCATGGGGGCTGCTCGCCCTATGCCAACTGTACCAAGGTGGCTCCGGGACAACGGACGTGCACCTGCCTGGATGGCTACACGGGTGACGGGGAGTTGTGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(68.6=88.9)
A:
NA
C2:
PF129472=EGF_3=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATACAGGACTCTGCTGG
R:
CTGGCACAACTCCCCGTCA
Band lengths:
202-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]