RnoINT0144311 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7226978-7227723:-
Coord C1 exon
chr16:7227577-7227723
Coord A exon
chr16:7227119-7227576
Coord C2 exon
chr16:7226978-7227118
Length
458 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CAGCCATGCTCCTCCCACAGGGC
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGAGCTGGCGAGGATGCGGGCTCACCGTCAGCTCGTGTTTCGCTACCACGTGCTTGGCTGCCGGAAGCTGGGGAGCCAAGAGCTGCTGGACCAGGGATATGTCACCGCACTGTCTGGACACACTCTGCGCATTAGTGAGAGGGAG
Seq A exon
GTGAGCTCCTACACACAGAGGTTAGTCCTGCTGGCTATAGGGTCCTCCTGCAGGGTTAGGATTCAGCCCCCAGATTCAGTCTCCGTGCCCTGCCTCCCTTCCTTTAATATTCAGCCAAGATCTGAAATAGGAGGGAGAGGAGTCCAGCCCCGAGGATACCCACACCCTGGGCCCCACTCATTAGCACTGGCCTGCCCCAACCTGGGACTCTGAAGGTACAAGCACCAAGTTCCCACAATGCCAAGCCCAGTGTGGTGCCTTGTGTAGGTTCCTGTAGTGTGATGGAAGCCCCATCCCGCGTCTTGATTCTGCCCTTGACCAACTCACCTTCACCCTCAAAGCACAGGATTGGCTATTATCTCAGGCCCTGCTCTGGCCCAGGCACACCCCATAGCTTTCAGTACCCTACTGATCAACGCAGCACCCTACTGATCAATGCAGCCATGCTCCTCCCACAG
Seq C2 exon
GGCAGCATTTATCTCAATGACTTTGCTCGGGTGGTAAGCAGCGATCACGAGGCAGTGAACGGTGTCCTGCACTTCATCGACCGTGTCCTGCTGCCGCCAGATGTGCTACACTGGGAGGCTGATACTATCCCAATCCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(40.3=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(26.1=66.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCTGGCGAGGATGC
R:
CGAGGGATTGGGATAGTATCAGC
Band lengths:
286-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]