RnoINT0144378 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27395637-27397675:-
Coord C1 exon
chr7:27397499-27397675
Coord A exon
chr7:27395727-27397498
Coord C2 exon
chr7:27395637-27395726
Length
1772 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CAGCTACCTCTCTCCCTCAGGCT
3' ss Score
7.87
Exon sequences
Seq C1 exon
GACTCAGGCTTGCTGTCAGTCATCACTGACTCCATCCACACCCCAGTCACTGTCTTCTGGCCTACGGACAAAGCCCTGGAAGCCTTGCCCCCAGAGCAGCAGGACTTCCTGTTCAATCAAGACAACAAGGACAAGCTGAAGTCTTACCTGAAGTTCCACGTGATCCGAGACTCCAAG
Seq A exon
GTAGGCTTCAAAATGTCCCACGGAAAGATACAAACTGGCACGGAGGCCCCACAACCCGGGGTTCACCATGTGTCCCTGTCTTAGGATTTTATTGCTGTGAAGAGACACCATAACCATGGAAGCTCTTAGAAAACACTGAATTGGGGCTGCCTTATGGTTTTAGAAGTCCTGTCCCTTCTCATCATGGCGGGAAGCATGGCAGCATGCAGGCAGACGTGGTGCTGGACGGGGAGCTGAGAGTTGTTCCGCAGGCAGCAGGAGGAGGCTGCGTCCCACACTGGGCAGAGATTGAACATGAGACCTCTAATCCCACCCCCAAAATGACACATTTCCTCTAACAAGGCTCTACCTCCTAATATCGCCACTCCCTATGGGCCAAGCTCTCAAACACACGAGTCTCTGGGGGTCATACCTATTCAGACCACCACAATCCCCTTGCATCCATAGGGTGAGGGAAGCTTCACCCTCTCTGCCCCATTGTGCCCTCCCCTGATTGACATACTTGGTTGCTAACTGAGGTATACCAGGTCTACCATTCTGTTGTCTGGACCAACACCCCACACCCAAGAGCACCCACTCCCTCTTGACCCGTGTACTGTCTCGGCACACTCCCATGTCATGTGGGAATGGCAGCTGACAAAGGTCCCCCTCAAGCCTTTCCAGGCGGCCTCTACTGCTCCTGATGCCAACATCCCTAAGCAAATGACTGGTTCATCTTAATGCAGTCAGTTTCCAGCCCCAGGACCTAGGCAGCTGTCCCAGAGAAGCCAGATCACATGGGGAAATGACAGCCCTCAGTGAGGACGTCTGTCACTCCGAGACAAGGCTCCACTCCAAGGTGCCAGTGTCCTGACTTCAGTCCACTCGTAATGTCCAGGTGGCTTCCTGGGTCTGCACAAATCACCACAGCCTTGGGACTGCATGGTCATTCCCTCACTGCGGTTGAGGCTAAACCTCTGTCAAGGTAGCAAGGTCATATCTCTGAGGGGCTCTGCAGGAGTCTGTTGCCCGAGTCTCCCCTGGCTGCTAGTGGTTTCTGGTGGTCCCTGGCAATCCTTAGCTGTGCATCCATGCACTCTGCCTTCGTCTTCCCACAGCCGTCCCCTCTCTGTGTCTCGGTGTACCCTCTGGTAGCCTCCTCTTCCAAGGATGTCGTTTATATTAAGAACCTACCCTACTTCAGGACCATTTCATCTTGCCTAACTACAAACTATATTTACAGAGACCTTGCTCCCAAATAAGATCATATTCTAAGGTCGTTGGGATCAAGATTTTATATAGTTTTGTTATTCTTTTTTCTTGAAACAGAGTCTTACTATGTAGTCCTGACTAGCTTGGATCTCACTGAGTAGACAAGACTAGGCTAGCCTCGAACTCAGAAGTCTGCCTGTCTTTGCCTCCTGAATGTTGTGATCAAGGTGTGTGCCACCATGACTAGCTATGACTTTTAAAGGAGCACATTTCAGGCCACAAAGATGCCCTGAACCTTTTCCCATCTAACTCCACTCATCTTCACACACCTAGACAGCCCAAGGATGTCCAGGATACCCAAGCACAGATGCCCTTATAGACCGTTCCTCCAGAAGAAACCTCCATCCCTGGAAAGTCGTAGGCATGCCTCATCTTTTTTTTACATCCATTGTCACTTTAGCTTGAGTTAGTCAAACACGTAGGAAACCTTGTGTTACCCATCTGAGTTTGGTTTGCTGGCATGAGTCCTCTGGCCCTTTAGCCCCAATGAAAGCGTTAACACAGCTACCTCTCTCCCTCAG
Seq C2 exon
GCTTTAGCTTCAGACCTCCCCAGGTCTGCTTCCTGGAAGACCCTGCAAGGCTCAGAGCTGAGTGTGAGGTGTGGAACTGGCAGTGACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(43.6=100)
A:
NA
C2:
PF0246917=Fasciclin=FE(21.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGGCTTGCTGTCAGTC
R:
ATGTCACTGCCAGTTCCACAC
Band lengths:
266-2038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]