RnoINT0144387 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27382735-27384620:-
Coord C1 exon
chr7:27384427-27384620
Coord A exon
chr7:27382769-27384426
Coord C2 exon
chr7:27382735-27382768
Length
1658 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CTTTCCTGACTCTTCCCACAGGC
3' ss Score
-10.16
Exon sequences
Seq C1 exon
TCGTGGACTTCTGCAAACAGAACAACGGGGGCTGTGCGAAGGTCGCTAAGTGCTCCCAGAAAGGCACCCAAGTCTCTTGCAGCTGCAAGAAAGGCTACAAGGGGGATGGCTACAGCTGCATAGAGATAGACCCCTGTGCAGACGGTGTCAACGGGGGATGCCATGAGCACGCCACCTGCAGGATGACGGGCCCA
Seq A exon
GTGAGTGCCACTTCCTTGGGACGTTTAGGAGAGCAAGCCTTGGTGCCCAGTTCAGCCTGGTGTCCTCAGCTACCCGGCCTCTGCTTTCCCTCTGGCCTTTGCCACACCATCTTTCCCCCTTGGTGCATCTCTAGTAAAATGTCAGTGCATCCTCAGCAGAAAAGGGTATCAGAGTCAGATTCAGTGCAAGCCATATAAGGTCTATTGCATAGTTCATAGGACTACACGAACATCACTTCTTAGCTTCCACTACAGCTAGATGAGACCCTCGAATTCAGGGAACCTAACAAGAACTGTAGAGCAGTGGTCCTCAACTTCCTAAACTCTGCAGCTATTAACTCAGCTAGTTAAAAAATCCACAGCGTTGTGCGTAGACCCGGCCACCATAAAAGCTATTTTCGGTTGCTCACTGTCGATACACTGTAAGTTTTCCATACTGTTAGTGCAACTACACACTCTTGACACCTCTTCTGTGTTTTCTGATTCTGCGCCTCTGCTCCATCGACCCCCTGGTACAAGCGGTCATTAGGACCAGCCCACGGCGCGGTCCAGCAACCTCCCACTAGTTTTGTTGAGAACCCTCGCTTACCCAAAGGGCTCATCTCCTCCCCTCCCCTCCTCCACCTCTCTTCCCTCTCTCCCCCCCATCTCCTCTCCCCCCTCACCCTCCACCCTCGCCCCTCTCCCTACACCTCCCTCTCCCTCAACCCCTTCTCTCCTCCTCTCTCTCTTACTCCTCCCTCCCCTCCCTCTTTCTCCCTACCTCCCTTCCTACCCTCCCATCCCTCCCACTCCTCTCTTCCCCTCTCCTGCCCACTTCGTCCCTCCCATTTCCTACCTTGACTATACCAATTTATCATGCACTCCACAGACTAGTACACAAAGCCTGCAATAAACCCTCAACAATAGAAGGCGATATAGAATCAACAAAATAAATTGGCCACATATGACAGATGAAACACATAATTCGTGTGGTGTGAGTCAGTGTGTGCATATGTGTGTGTACGGACCCCAACGCTCGAACAAACACAACCCAAGTCCCGTCTCACACCACAGACCCTCGACACAGCCAAGGGCAGCAACCACTCTTAGCTTGTTCTTCAACTCTCTTCACTTGGTGTGTCTGGTGATTCGCTGGAAGTGTGGTCTTTACATGTTATTAGTTGACAACAGAAGAGACATCATAGGGTTTGTAACATTAAACGAGGACAGTCTCTGACTGGACCCGTGGTCACAAAGCAACAATTAAGGACTGTATCGGGTGCCAGGTATGTGTACGAAAAAAAAAAAAAAAGACAGAGTCCTCACATTCAAGAAGCATAGTTACAGGTGGAGAAAGGGGGGTGCTTAGTACAAAATTCAACACGTGACCCCGGCGCCAACTGAGAAAGGCCATGAGCAGAGATCAGGCCCATGTGTGGTAATGGCGGTCAAGAGTTGCTTCCTGCAGGCTGCTTTGGGTGAGGGGCTCTCTGAGAAAGCAACCTTTATGCTAAGAATGGCAGCCCTTCGCCATCACAAGCACAACAACCTTCATCACTGCTTGCATGGGGCCCAGGGGCACAATGCCTTTCTGAACTGCTCTGTGGCCAGATGTGTGTCCTCTGGTGCCTGGGGATCATGGGGGTCTCTTCATGGCTTTCCTGACTCTTCCCACA
Seq C2 exon
GGCAAGCAAAGTGCTGAATGTAAAACGTCCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:65
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=55.4),PF129472=EGF_3=PU(50.0=29.2)
A:
NA
C2:
PF129472=EGF_3=FE(28.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGACTTCTGCAAACAG
R:
AGTGGACGTTTTACATTCAGCACT
Band lengths:
227-1885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]