RnoINT0144390 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27504855-27505501:-
Coord C1 exon
chr7:27505376-27505501
Coord A exon
chr7:27504893-27505375
Coord C2 exon
chr7:27504855-27504892
Length
483 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
TCGTTGTCTCTCAAGCACATCAA
3' ss Score
-7.31
Exon sequences
Seq C1 exon
CCATCCCGGAGTGTGCAACCTTGCTCTGCCCAGAAAACTCCAGATGTTCACCTTCCAGCAAAGATGAAACTAAACTTCAGTGCAAATGCCTTCCCAATTACGAAGGGGACGGCCATAACTGCAGGC
Seq A exon
GTGAGTAGATCCCACACTGTTTGTGTTTCTGTGTGATATGCAAAATTCAAGGGTCAAAGGCTTAGTCTTGGAAGCATGACAATCCCCTTCTGTCTCAAGCACATGTAGAGATTAAATCAACATGGTATGCGGTTATTACAATTTCTGGCATTCGTTTGTGAATCAGTTTGGTAGAGCAGGGTGGTCAGATGGAATGAAAGCATGTGTTTCTATCTGAACACTACACAGCTAACTGCCTTTGTGTCCGTGATCACGTGAGCCACAGTTCTCTGGTTGATCTCATTTTCCCTCCCCTCCCCTTCCACTCCCCTCCCCTCCCTCCCCTCCCCTCCTCCCCTCCCCTCCCTCCTCCCTCGCCCTCCTCCCTCCCTCCCTCCTACCTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCATCTCCGAGAACTCTAAAACCTATATCATGCCTCGTTGTCTCTCAAGCACAT
Seq C2 exon
CAACCAATGGCTTTAAAAACCAGCTCTGCCACCCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=83.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]