RnoINT0144392 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27378033-27378420:-
Coord C1 exon
chr7:27378255-27378420
Coord A exon
chr7:27378140-27378254
Coord C2 exon
chr7:27378033-27378139
Length
115 bp
Sequences
Splice sites
5' ss Seq
AAGGTCATT
5' ss Score
4.32
3' ss Seq
CCCCTGTCCTTTCCTTCCAGATG
3' ss Score
13.2
Exon sequences
Seq C1 exon
GCCAAGTATCACCTGTGCTCGGCCGGCTGGCTGGAGAGTGGGCGGGTTGCCTACCCCACGACCTATGCCTCTCAGAAGTGTGGTGCAAACGTTGTTGGGATCGTAGACTACGGATCCAGGGCCAACAAGAGTGAAATGTGGGATGTCTTCTGTTACCGGATGAAAG
Seq A exon
GTCATTACCCCATCCACTGCAGGCCCTCTGCCCGGACCGCCAATCAATCCCCAAGAGTGAGCAGGGGGGATCAAGCCTCACCTTACTGGGCATGGCCCCTGTCCTTTCCTTCCAG
Seq C2 exon
ATGTGAACTGCACCTGCAAGGCAGGCTATGTGGGAGATGGCTTCTCGTGCAGTGGGAACCTGCTGCAGGTCCTCATGTCCTTCCCCTCGCTCACAAACTTCCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0019312=Xlink=PD(55.4=91.1),PF129472=EGF_3=PU(41.4=21.4)
A:
NA
C2:
PF129472=EGF_3=PD(55.2=44.4),PF0246917=Fasciclin=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTATCACCTGTGCTCGG
R:
GAGGGGAAGGACATGAGGACC
Band lengths:
253-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]