RnoINT0145341 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21850499-21852723:-
Coord C1 exon
chr3:21852565-21852723
Coord A exon
chr3:21850634-21852564
Coord C2 exon
chr3:21850499-21850633
Length
1931 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAC
5' ss Score
6.64
3' ss Seq
TTCTTCCCTGTCCTTTTTAGGTA
3' ss Score
13
Exon sequences
Seq C1 exon
GTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAG
Seq A exon
GTATACATGCGTCCTTTTCTTCTTTAGAATAAATAGTGTGAATACTCTGGGAAACCTTGGAGATGTGGAAAAAAATAAGCTTTTTCACATAGAGGCATATATTACTGATATTCTGCTTTATTTCTTTGGATGGTGCTTGTTATCAGACCTTAGGTCTTGTGCACATTAGGCAAACACTCTACCACTGAGTCGCGGCTGGAGCTCTCTGCATGTTTTTTTGTTTTGAGACTGGGCTTCTAGTAGTCCAAGCTGGTCTCCTCCAATTCACTGTGTATCGGAGGTTGACATTGAACTAACTAGTAACCTTCCTGCTTCCACCATATGCTGGAATTATAGGAGGATTGCCATATCTGCTTGTTTGGCCTTAATTGTGCCAGATTTATTTTTCAATATATTTATGAAGGTAATCATTTTCATGTACCTTTATATATTGATCTTCTTTTACTGAATTCTTAAAAAGAATCTGTTAGCATACCTATAAAAAATAGATAAACTTTAATTTAAAACACATACTGGCCAGGAAAATACTTACAGAATGTCATAATGATGTATCAAGACTATCACTTTTTTAAAAAAAGATTTGTTTATATATTTTACCTATATGAGTGCTCTATCTGCATGTACACCTGTGTGCCAGAAGAGGGCATCAGATTGCATTATAGCAAATTGTGAGCCTCCATGTAGGTACTGGGAGTTGAACTCAGGACCTCTGGAAGAACAGCCAGTTCTCTTAACCGCTGAGCCAACTCACCAGCCGCAAGACTAGCACTATTAACCGAAGGATAAAACCTTACAAAGTCTAGTGTAGGAAACAGATTTTTTTGAGGTGTCTGACAAGCTTGGGTATGTAAGATACACAAGTTCACTAATGTGTGAATCCCATAGTGGGTGTAGACTGCCCACTGTGTATTTCAGAATAAGAATGAGTCCTGGATGGTGCACTAGTGATTCCAGATAATAGAATGGGATGAATGTAAGTATTGAATATGTAAAATATATATACAGGAAGAGAATCGACTGTATTCTCTTGACTTGGCTTTAGAATAATAGCAAGAGCTCACATTTATATTTTTGAGAATTTTTTGGGGGGTGTGGTGGGCAGAGAAAACAGACATATAGCAGACATACAGAGTAAAACTCTGCAAAGTGAGATTTCACCTCAACAGCCTAAAACAGAAGTCAATCCCTTCTCTTGTGTTTCTACAGCAGGCAACTAATCTGTAACATATATAGTTTCACAGTGACGATCCAGGGAATGGGTGCCTGTGTTGGTTCTTTTTTTTTTTTTTTAAAGAGATTTATTCATTTATTAGATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCAGGACCCCTGAAAGAGTAGTCGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCTTATATTGGTTCTTTAGAATCTATAGTTTATAGCCTGTTGTTTTTTTCATTAGGTGTATTCCGATATGTTTAGAGGGACCAAAAGGCATATAGAAACAATGCCTCCCACATGCAAAACTGAGATTATTTCTTGCATTCATAAAGATGAAAAGTAACTTTCAAGGCTTCAAGCAAATTGCTGTTGCTGTCTTGCTTTGTTAGTTACCTGCCATGTTAGGACATGAACAGTTACAGCTCAGAACGTAGTTCAAATGGAGCAGTCCTACTTCAAAGGCAGGCTGTTCAGGTGACCACAGTATTTACCCACCCCTTACAGAATCTTCCTCATCTATGGTGATGTTTTGCTATCAGATGATTCATTTTAGCCTTTAATGTTTTAAAGTAGAATTAATGAGTTTACTTTTTAGCATAATTATGTTAAAAAGATACTCAGTGTTAAACCTTTCTTCCCTGTCCTTTTTAG
Seq C2 exon
GTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=NA C2=0.678
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.3=7.5)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACAGGTTTTGATGCAGA
R:
ATTACAAAGCGCTTGTCATGGC
Band lengths:
270-2201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]