RnoINT0146200 @ rn6
Intron Retention
Gene
ENSRNOG00000005031 | Surf6
Description
surfeit 6 [Source:RGD Symbol;Acc:1307382]
Coordinates
chr3:5449073-5452156:-
Coord C1 exon
chr3:5452024-5452156
Coord A exon
chr3:5449274-5452023
Coord C2 exon
chr3:5449073-5449273
Length
2750 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TAGCTTGTTTTGTGTTTCAGCTG
3' ss Score
8.25
Exon sequences
Seq C1 exon
CGGGACCCTCTGATTGTAGCTCCAGCCCTGGTTGCTAACATGGCTTCTCTCCTGGCTAAGGATGCCTATCTGCAGGACTTGGCCAAGAAAATCTGCGCGCAGCCTGGCCCTGAGCGGCAGAGGAGCCAGTGGG
Seq A exon
GTAAGGCATCCGGCCCGAGCAGCCTTTGGGAATGGACGCCGTCGTCTGGGGCCCGCTGTCCTAGGTCGGGGCCGGACCCTCCACAAGGGATATGAGTTCGAGTGAGTGGGTAACTGGCGGGCACAGCAAAGGCTTGAGCTCTGATGGAGTGGGAGGGAATTAGGAAATTACCAGACTCGGACGGGAAGTAAAACGTGCTTGCTACTGGAAGTGTAAGTTTCTTCACTGGCGTGTGTTTTTCAGTTCTTGTCTGTGAATGTGTTTTAGATGTTCAAAGAACGCACGCTACATTCTTGGCCGTTTAGTTTAAAACACTAACATTTCCTCATCATTGAAAGTGGAAGCAAGTCTTAATCATAAAAGGTTAATTGTGGCTTGGCCTGGTTGGTGGGGCCTGCTGGCCTGTCTGAGCTACATGATGTGTTCACCTCTGCATGAACAACTTCAAGAAACTCTCAAAAAGTAAAAGAAGCGGGTGGAGGTCTGACTCTGGTTAAGAGCACTTGTTTTTCTTGCACAGGACCCACATTTGGTTCCTAAGGCAGCTTACAGCAGTCCCTAAGTCCAGTTCTAGGGGCTCTTAACACTCTTTTCTGGCCCCCCAGTGGCACCAGGGATGATCTTAATGCGTAGACATAGATATTTACAACACTCACAAAAGTAAACTAGTCTTGGGGGGCGGTGGGAGGGGGATTGTGGTCCACATGCCTTTAACACCAGCACTTGGCAAACAGAAGCAGAACACTGTGAATTCCAGATGGCCAGGACTGCATACTAAGACCCCTTTTGTTTGCTTTTTGAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCGGGAACTTGCTCTATAGACCAGGCTGGCTTTGAACTCAGATTCACCTGTTTCTGCCTCTCAGGTGCTGGGATAAGTGCGTGCCACCACTTCCTGGTTTAAGATTCTGTGTTGAAAGAAATAAGTAAAAAAGAGCTCGAGCGATGGCTCCATAGTTCTGTGTATCTCCAGCTCTTAGGAGAGGACCAGACTGTCCCAGCATCCACCCTTTTTAGACCCCACAGACACCCTCATTTATGGTGCACGTACTCCACACATACTTACAAAAAGGAAAAGGAGGGCCAGACTTATGATCTCTTAGAGCTCTTGCCTAGTGTGTGAGGCCTGGTGCGTGATATCATCTGGGAAGACAAAAACAAGCGTCTGCTCAGCCAGGACACAGAAAGCCACAGCCACACAGAAACAGTGAAGAGCTTGTTTTGGAGCCCGTTTGGAATGATCATGGCCTGGAAACATGGATTTAGGTTACCCTCAAATTCCATTTTCCAAGGGAAAATACTTCTTGAGGCAGTTTCTTGAAATTTTACAGAACAAAGAAAGGCAAGGCAAGTTTAAAATACGTTAGCGTGTATCAGGTAGGTATAGCAAGATGAGGAAAGCTCTTTTTAGGACTAGATGATGCTGGCATTCCCTCCCATCCCCCAGACGGGGTTTCCCTGTGTAGCTTTGCCTATCCTGGAAGCCCTGTAGACCAGGCTGGCCTTGAATTTACCGAGATCCACTTGGAGTGGAGTGTCGGGATTAAAGGCATGTTTCACTATGCCTGGTGCTGATAACATTCTTAGTTTTTAGGTTAGTCTGCTAAGTTAATAGATTCCATTATCTATTAGTCACACGGAGGTGGGCAAGGAGCAAGGTTTTCATGGGACTAAAGTGAACCTGAGATAAAGGCTCCAGACCTGCAACATTCCACTCCTCTGCAGCTCAGAGGAGTCAATCAGTCTGTAGACCGCTTCTTTCCAAGAAATCTCACTGACAGAACCAAAGTGGTAAATGAATTGAGCTCTGTGGGGTGACTTACAGGAGCCAGAAATGACTCAAAGGCAGATTTATCACCAAAGCATACCCCAGTATGGGTGATGGGTCAAAAGCTGGAAACCTGCTGTTTGATGCCAGGCTAGGATACATAATGAGGTCCCGTCTCAAAAGAGCAAGTAAACTAATTATTTTTAAATCCAAACCTGTGTACTGTACAACTTGCAGGCAGCTCCAAAGTTGAGTATTTCATGTATGTCTGTTTGACTAAACGATGCTCAGCCTTCTTGTATGTGCTTGGGGAAGAGGGAACTTAGTGAATCTGGTTAGTTTCAGGGACTTCCTGAAGCGTTGGTGTTTAGTTCCTGAGTGTAAGGAGTGTCCCTCTAAGATGGAAGGCTTTATTTATTTATTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCCTTGTAGACCACATTGGCTTCAAACTCCGATCCACCTGCCTCTGTCCCATGAGTGCTGGAATTAAAGGCGTGCACCAGCACACTGCTGGCAGGTTTTATTTAGGTAGAAATTGCTATTCGTGAGCCTAGTGTTGAATTTTGGGCAGTGAGGAAGAAGTATTTGGCAGCACCGTCATTTATTCTTCCTGGAAGAGGGTGGTTATGTGTAGATAGTAGGGTGATGGCCACCCTGAAGCTGGACTTAACGTTCTGTTTCTCATGTGCATAAGTGCTAGATTAAGTGAGGAGTATATTTTGGATTTAAAAATAATTTACTTGCTCTTTTGAGACGGGATCTCATTGTGTATCCCAGCCTGGCATCTCTCAGCAGTTCTAGTGGCTTAGCCTCCAGATCCTGAGGGACTGCCGCACAGCACCTGGCTCTTGTCGTCACTTTTCCTTACGGGATTGGTCAGGAGGGATTTAGCTTGTTTTGTGTTTCAG
Seq C2 exon
CTGTCAGAACAAAAGGCTCAGAAGCTGCTGGACCCCCAAAAAAGAAAAGGAAGAAAACACAAAATAAGTCTCGGAAGCAGGAGGAGAAAACTATGGAGCACAAGACTAAACCCCTGGGCAAGAAGTCTCCCACCTCTTCTAGTGCCAAGAAACCAGGGCTATCCAAACAAGGGAGCTCCGGCTCCCTGGGGTCCCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005031:ENSRNOT00000006699:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]