RnoINT0149352 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46649123-46651554:-
Coord C1 exon
chr8:46650962-46651554
Coord A exon
chr8:46649697-46650961
Coord C2 exon
chr8:46649123-46649696
Length
1265 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGTGCTTTTTATTTTTCAGTTA
3' ss Score
8.36
Exon sequences
Seq C1 exon
TGTCTACCGTGCGGTGCCCCAGCTTCAGCCATTACTCTGTATGCACCAGTAGTTGCCCTGACACCTGCTCGGACCTGACGGCCTCTCAGAATTGCGCCACGCCGTGCACGGAGGGTTGCGAGTGCAACGAGGGTTTTGTCCTCAGTACCAGCCAGTGTGTCCCATTGCACAAGTGCGGCTGTGACTTCGAGGGCCACTACTATACCATGGGGGAGTTCTTCTGGGCCACGGCCAATTGCACAGTGCAGTGCTTATGTGAAGAGGGCGGGGATGTCTACTGCTTCAACAAGACCTGCCGCAGTGGGGAGGTGTGTGCGGTGGAGGATGGTTACCAGGGCTGCTTCCCCAAGCGGGAGACTGTGTGCCTGCTCAGCCAGAACCAGGTGCTACACACGTTTGACGGCGCCGCTTACGCCTTCCCATCTGAGTTATCATACACACTACTCAAGACCTGCCCCGAGCGTCCCGAGTACTTGGAGATTGACATCAACAAGAGGAAGCCTGATGCAGGGCCTGCTTGGCTCCGGGGTGTTCGGATCCTCGTGGCTGACCAAGAGGTCAAGATAGGAGGCGTCGGGGCTTTGGAAGTCAAG
Seq A exon
GTAAGATTCCTTGCTTCCTCCGATGGAGTGACAGGACGTGCCTATTTTTTTCTTCTGGCTTGGCATTCTTCTTCTGGCTGTGAGTTGATTCTCAAAATGGACATGGATCCCAACATGGTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTACACGATTGACCCAAAATGAGACTCTTGCAGGTGGAGAAATGGAGTCAGGTTGGAATTCTCTGGATAAGATAGCATGAAATTCACCGTCCATAAGAGCAAATCCTCAGAAAAGGCTATGTGCCAAGCTAAACCTTTCCCCTGAAATAGGTCACAGCATCGCCTCTACCACATAGCTCTTGAAACACAAGGCACAGAAGTGTTAAGAAACCTCCTCTAGGGACACACAGCTTCCAAGTGGGATTTAAGAGCGAGTAGGCTGGCAGCTGTCATGTATGTGCTTTGTGCTGTAAGATCCCTTCTGCGGGTAGAAGGAAGTTCATTGGCATGAGGTGCATGCTGTGCTGCCTCCTATCCCTCTGACATGGGCTAATACACCCGTGATCAGGTGTCTGGGCTCATTAATTCTGGAAGGAATCTTGGAAGTCACTTAAAGCAATGTTTAATTCCATAGAAGGTGCCAAGGGGCTAGGTGAGGGTCCCGTGGCTGATTTGGCAGAGATGAGGTGGTCCCAGGAAAGGACCCTCCCTTCTCTCAGTTGAGGGTGAATTGAGTGGCATTTGGAAAGCGAAAATAACCTCAAGGAGGTTACGAGATGCATGTCCACAGAAGGAAAAGGCTGTGTTCTCAGCCCCTTTAGTAAACTGACAGACATCAATCTAGTAAAGGAATAGCAGAGATACAGATGTGGATGGACATCTAGACCTTAGCTCTCCTCTACGCACCCCATAGACTTTCCTGGGGCACAGGAAAATTAAAAATTGATGGTAGAAGAAGGAGCCCAAAAGGTGTGGAGGAAGGGCACTGTCTGGGAAACGGTGCCTGAAGGGAGGTTGGCAGCAGGGGAAATACCGCCCCTCAGGACAGGTCACTCAGGGTGTCTGTGTGGGACTAGCTTAAGGTCTGGGGCACACTAAAATAATGAGAAAATGGGCACCTCAAAAGAGAAAAGCAAGCTTGTGAATAAACCATTGGTGTTTGTGTACAGTTTACACATAGCATCAGCTTCTGGGTATTTTCAAGGAGCTGGCCCTGGCAGAGAGCCGGTCTAGCCAACCTCAGAAGCACTGGGTCCTCTATGGTCTCTGCCCCTGACAGCAGTGCTTTTTATTTTTCAG
Seq C2 exon
TTAAATGGTCAAGATGTGGAACTACCCTTTTTCCATCCTTCGGGGAGGCTGGAGATTCATCGAAACAAAAACAGCACAACTGTGGAGTCCAAGGGTGTGGTGTCTGTCCAGTACTCTGATGTGGGACTACTCTATATCCGGCTCTCCACCATGTACTTCAACTGTACTGGGGGCCTGTGTGGCTTCTTCAACGCCAATGCCAGCGATGAGTTCTGCCTTCCTAATGGCAAGTGCACAGACAACCTGGCGGTGTTCTTGGAGAGTTGGACCACGTTCGAGGAAATCTGCAACGGCGAGTGTGGGGACCTGCTGAAGGCCTGCAACAATGACTCCGAGCTGCTCAAGTTCTATCGGAGCCGCTCCCGGTGCGGTATCATCAATGACCCCTCTAATAGCTCCTTCCTGGAGTGTCATGGGGTGGTCAACGTCACTGCCTACTACCGCACCTGCCTTTTCCGCCTATGCCAGAGCGGAGGCAACGAGTCAGAGCTGTGCGATTCTGTGGCCCGCTATGCCAGTGCTTGCAAGAACGCAGATGTGGAGGTGGGCCCCTGGAGGACCTATGACTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=27.3),PF127142=TILa=WD(100=28.8),PF0009420=VWD=PU(49.4=38.4)
A:
NA
C2:
PF0009420=VWD=PD(49.4=39.6),PF087426=C8=WD(100=40.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTACTCAAGACCTGCCCC
R:
ATTGGCGTTGAAGAAGCCACA
Band lengths:
354-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]