RnoINT0152535 @ rn6
Intron Retention
Gene
ENSRNOG00000040275 | Tmem210
Description
transmembrane protein 210 [Source:RGD Symbol;Acc:2318321]
Coordinates
chr3:2504694-2505058:+
Coord C1 exon
chr3:2504694-2504760
Coord A exon
chr3:2504761-2504922
Coord C2 exon
chr3:2504923-2505058
Length
162 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
TTGTGGCCTTGTTTCTGCAGCTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
ATGGACTCCTGCCCAGCTGGCCCCCTTGGCCTGATATGTCTGTCCCTTGTGCTCATACCTGCTTCAG
Seq A exon
GTGCCTCCTCCCAGTAGCCCTCCAGCCAGAGCCCTTCCCCTTTTCCAGGCAGGGCAAACCATTTGTGTCCTTCTGAGGGTCACAGGGTGGGGTGGGAGGTGGACCTGAGGGTCCTCCACAGGCAGGTGACTAGCCCCTGGTCTTGTGGCCTTGTTTCTGCAG
Seq C2 exon
CTGGAACCTACTGTGAATGCAGCCTCGGTCTCAGCCGTGAGGCCCTTATTGCCCTCATTGTGGTGCTGGCTGGTATCAGTGCCAGCTGCTTCTGTGCCCTCGTTGTTGTGGCGCTTGGTGTCTTTCGGGCCAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000040275:ENSRNOT00000061987:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF151951=TMEM210=PU(37.1=93.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACTCCTGCCCAGCTG
R:
CCTTGGCCCGAAAGACACC
Band lengths:
202-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]