RnoINT0153379 @ rn6
Intron Retention
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38082695-38083327:-
Coord C1 exon
chr11:38083297-38083327
Coord A exon
chr11:38082815-38083296
Coord C2 exon
chr11:38082695-38082814
Length
482 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TTCTCCCGATCCAATGCCAGGGG
3' ss Score
5.34
Exon sequences
Seq C1 exon
GCTGTGGCTGCTGGCTTGCTTTGGAAGTTCT
Seq A exon
GTAAGTTTTGGGCTGGATGCTGCCACTGTGTGCATGGCTGTGACTGTGACCCTTCTCGCAGGCTGGAGGAGCCACGTGATGCCTCCCAACATGGTTTCCCTTGAGGGCAAGACTGCCCTATCCTCCCTTTTCTCCATGTACCGTTTTGACAGTGAACTCTTGTTTTCCCTAATCTGTGGCTTGTGGGAAAACATTCTCTCATCCAAGTAGCAATCATTCTGTTCCCTGCTGAGTTTCTGTGTACTTCCTCCAACATGGCCACGCCTATCCCAACGAGGCCACACCTCCTAAAAGTGCCATTTCCCAAGAGCCAAGCTTATTCAAACCACTACAGGTGGCCATGGCATGTCCCTTTCTTAGGAGGAGGTGGTTTCTCCTGTTCACTGGACTGGAGGGTGAATGACAAGACTCCTAAGGGCTCTGCAGTGCCTTGGATGCTCAGCCTGATGGGTTTTCTTCCCTTTCTCCCGATCCAATGCCAG
Seq C2 exon
GGGACAGCAAGTGCTCTTCATCAGAGATGGAGTGTGGGTCTTCAGGGACATGTATCAGCTCCTCCCTCTGGTGTGACGGAGTGTCACAGTGTCCCAACGGGGAAGACGAGAACCGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976:ENSRNOT00000002713:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]