RnoINT0153382 @ rn6
Intron Retention
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38071127-38075292:-
Coord C1 exon
chr11:38075182-38075292
Coord A exon
chr11:38071171-38075181
Coord C2 exon
chr11:38071127-38071170
Length
4011 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GAGTCCCATCTTCTTTCTAGTGA
3' ss Score
4.82
Exon sequences
Seq C1 exon
GAACAGCTTTTATTCTAGCCAAGGGATACCAGACCAGAGCGGGGCAACGAGCTTTATGAAGCTGAATGTGAGCGCAGGCAACGTCGACCTCTATAAAAAACTCTACCACAG
Seq A exon
GTATGGAGGGCTCCTCTGATTTGCAGAATTTGAGAATGATGAGGAGATCCCATAGACAATGCCTTCCTGAGCTGATTTTCCTAGACTATGCTCTAGGTGGAGTTAGGAGGTCAGCTTCATACTGCTGGAGGTTAGAAACAGGACTTGCAGTGATCTTGACTTCATTCTTACCAACTTCTGGGACTTACAAGATACTTTGCCTTTTTGGTTTCAATCTCTACTGTCTGGCCCGCTGTTAGCAATGGCTTTCGCTATTGTTTGGTTGGCTGGTTTTTATTCTCCAGACACTGGAAGGTATGGTTACTGTGCTAGGGTATATGCTGTTTGGCTGTTAGCTACTGTAACAAAATACCTGAAGCAGACCGCTTTATAAAGAAAAGGATTTTGTTTTTGTTTTTATTGTATTGTCTTACGCTTTTAGAAAGAAGATCCATTTGACATGGCATGACTCTAGCAGGGTCCCAGGGCCACATCTCAGCATGCCAGGAATGTTAAGCCCCGAGTGGCCTCTCTCCTTGTCCTTATGCCACCAGGACTCTGTCACAGAGATTCTTCCATTCAATGACTTAATTTCACAAAGCCCCACCTTTGAGCATCACCATGTTTCTGCTCTTAGTACCATGACCCTGGGGCTTATTTTCCACCCTAACCTCAGAGGGACAAAGTGTATGACACTGTAGCATTGGGCACCAGGAATTCAAGAGACTTTCTGGCCCTTGGTTCCAACCCATGACTGTCAGTGAGAGGATGCCATGGGGTAACACTTGGGGCTCTGGTGCGATATGGCTAGTTCAATAAAAACTTGCTGTACCCAGGCCACAGGTAATAGGTGTAATGCCTGAGCCATTGCGAGCTTGGAGGGGGTCATGGGCAACCATCCTTTGTGCGTGAGTAGACATGACTTTAGGCTCTTTTCCAATGGTTTTGATACTGGGGACCCATGATGTCTTCTTTGCATAGAGATTTCTTCCTCCAGGGCCACACGCTCTTCTCCAGGTGGCTCAGCTGCCTCTAGGGCCAGCTGTCAGGTACTACATATCAGGGCTGGAGAACTAATCATTCACTCCACATCTCTACTGAGCGGCTTGCCTTCCTGGTGGCCACCAACCAGGATGTCCCGCTGTAGCCTGGCTGTCCCCCTGAGAATGTGGCAGGGCTGGCCTTGCTGGAGAGCAGTGCCCTGCCAGATGTTCACCCAGACAGCAGGGCTTAGCACAGGAGGCAGGGTGCTTTTTGTGAGTCAAGTAGTTCTTTGTCTTCCACAAGGACTCAGGCCTAGAAGAGTCAGCAGGTATAGAAGGGAGGAAAGGGGAGGTGCAGGCTTCTGGTGCAGAAGAGAGCACAGCAGAAAGAGGTAGGCTTAGGCCAGTGTAGGTGAGGGCCTTCACAACTCCAAGGTGCTGACAGGAAAGTTATTGTCTAGCATTGGGCTTCTTAAAGTTGTGACCCTTTTCCACCCAAGAAAATTTTATGTGACCCCAGGTATATGGGATCATAAGATAGGTATACAAATGTAATGTTTACTGGTAATAAGTCATCGAGAAATTTATCTCCATACAATTCCTGTTGCATGTATGTATGTATGTATGTATGTATGTATGTACATGTGTGTATGTGTGCCTGTATGATTTAAAGATGGAAGCAAATTTGCATACTAAAATACATGAGATAAATGCGTGTGTGTAGCACAATCTACTTACATACACAGGAGTCCCTGCATCCTGCCATTGAATCTGAATACTTTGTACACAGAAATGAGGCATTACAGTAACATCCTGCAGCTTGTTACACACACAACTCTAGAACGGCCAGTGAGGCATTCGCAGAGGGATTCATTGGTGAACATGGCCTGACCGTGTACTCAGTACGAAGTGCCCATGGTGTGTGTTCAGAGCCAAGGCTTTCATGGAGTCGTATGGTGCAGAAGTACCCTCTTTCCAGTGCTCCCTTCTTGAGGCTTCCTACCTGGTACCTGGGTGGAAGTTCCTTATTTGGGGGTCTGGAAAGGGCCCCATTTGATGTGTGCTTGGGTGACAGGCTGGTGCGTGTGAAGCTCTATCTGTCCAAGTGACCTGATGGGACTGATGTTTGGGAAATCAATTGCTCCCCACAGAACCACAGCTGGTAGCTGATGCCGTCAGGACATGCTGTGGCCTCTTCAGCACACCAGGGACAGTGTCTATAGGACAGAATGCACTGATTTTTTTTCTCCTGCACAATGTGAGAAATTGACTCCCAACTTGAGTGACTTTTTTTTTTTCTGTCCCTAGCAAAGTGCTGGTTATATTGTGATCTGTGGCTTACATGTAAACCATCTGGGGAAATTAGAAGTTTCTAGACAACTTCCTGATGACACTACTGGATAGCTGCTCATTTGTTTGTAACAGGGTCTTGCTGTGTAGCCCAGGCGGGCTCTGAACTGGTGATCCTCCTGCCTCAAACTCTCTAGCACTGAAATTTCCAGTGTTTGCCATGACACCTAAACTAGGGAATAATTTTAAATTATACAAGGACAGAAGTAAAAACTGACTTGTCCTCTCCCTCAAGCCACGATCCTAGTGGGTGCCAAAAGTTGGACATTTCTTGTCTGAAATGTTGGAGGTAGAAAGAATTTCAGAGTTCAGATTTTTCGATTTAACTTTTTATTGATTCTTTGTGAATTTCACATCATGCACCCTAATTCCACTCATCTCTCCATTCCTTTATACCCACCCTTGAAACTTCCCCCTACCAAAAGAAAAAAAGATCTCATTGTGGAAGCTGTAGTGTGTCACCATGTGTCCCACAGTATACCCTTTTGTCCACACTTCTTTACTTGCAAATATTCATTTTCAAGTCATCTGGCTTCTGCTACACTATGAATACTAGATCCTTACCAGGACTCTTCTCAGATATACTGTTGTTGTCAAGGAGATCCCACAGTTTTGGTTCTATAGGACTGGTTCCTTCATGGACTCCAGCAGCTCATTGATAGGGGTAGATGTTGGAGTGGGCCAACTTAAAGCCCTAGATCTGGATTTGTATAGTAGCTGAGTTGGTCAGCCAACCAGCTCTCCTGCACTCACACCACCAGGATGGGTTCTCCAGCACTGTCCCAGCCAGCTCACCCAGTTCCACAGCTGGCAAGGGGCAGAGCCAGCTCTCCTACTCTCATGCCCTTGGGACCAGCTCACCCATGCCCACACCAGCAGGGCCAGTTCTATTTTTTTGATGCAGGCAGGATGCAGGGTTCTTTCTCCAGAATGCTATGGCCAATGAGGGGCAGGACCAGCTCTCCTGCCTGCAGATGGCAAGGGACAAGGAGTTGGGAAATGGCATCTCTCCCTCACCCACCCACAGCACAGCTGACAAGTTGTGAGTCAGCTTTCTTACACTTGCATCCTTGGGGCCAGCTCACCTGTGCCCCTGCAGAGTTTAGATTTTTAAAATATTCATGTCTGAGATATCTTGGGGTTAGGAATCAAATCTAAGGACAGAATTCATTTATTTCATGTATTCCCCTACTTATTAAAATTTATTTAGTCTGAGTATGTGGTACACATGCAGAGGTCAGAGGAATCAGTCCTTTCTATGTGGGTCTCAGGGATTAAACTCAGACTTTCCGACTTGGAAGCAAGTACCCACTGAGCCATCTCTCTGGCTCTTGTGTGCACCTTATGTGCATAAACTAAGGTCATTGCATTCTATCGTGAGTATGGTTGGACTGTGACACTTCACATGTGCTTAGGTGTGAAATTTCCCTTTTGTGGTATTGAATAGGGGGCCTCCAAAAGTTTTAAGATTTTGACGCATTGCAGATCGGGGATCAACTTGGGTTGCCATCTCGTTCTACCTGTTGAGAAGAGGCAGAGAGTTGGACTCGTCTGAGTCTGGTGGCGGAATCCATTCCTTGCCACTGAGGTCTAGTCCTATCAGTAGGGTCACTAGTAGTGGACAGGAGGCAACACCAGGAGAAGACACCAGCGCCCTCCCTCCCTGCCTATGGTAACCAGAGTCCCATCTTCTTTCTAG
Seq C2 exon
TGACTCGTGCTCATCCCGCATGGTGGTTTCTTTGCGCTGTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976:ENSRNOT00000002713:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(38.5=100)
A:
NA
C2:
PF154941=SRCR_2=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]