RnoINT0153406 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49473669-49474928:-
Coord C1 exon
chr8:49474769-49474928
Coord A exon
chr8:49473836-49474768
Coord C2 exon
chr8:49473669-49473835
Length
933 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTAGCCATCTCTTTCCCTAGGAA
3' ss Score
8.7
Exon sequences
Seq C1 exon
ACTGTGGAAAGAGCCTGAAGACTACTCGTGTGGTGGGTGGGGTGGAGGCCTCTGCGGATTCTTGGCCGTGGCAAGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATTCTGGACCACCACTGGATTCTCACAGCAGCCCACTGCTTCAG
Seq A exon
GTAAGTGAGATGAGGAAGCTAGGAGGGCGAGGCTGTGCAGGGAGCCAGCCTTGTTTCCTGATTGTGCACCCGTGCCCTGCCCCATTTTCTCTGGGTGCAGCTTCTATGCAATGAGACACCAGCCATGATGTCCTTGCTAAGCATTGAAAAATCCGTGCTGGTCTCCAAGGTTGAACGCTATTGGGTGGAAAGCTCCAGACACCCAGGATCCTCACCCATTCCATCCATGCTACTGAAGCTCTCCCCACACACCTGGGCTCCCAAGAACTTGTTTCCTCTTTGTAAGTTTTCCAGGAAATGACACCAAGATCTAGAGTCACTGCCTACGTCTAGAAACTGAACCGAGTGTAGAGGATCCTTCAGTCCAGCAGACAGGGAGCTGGCCAGGCCTTGAGAAAGGGGCTCCACCCAGGGCTTCTTCATTTCCCTTTCATTCAGCACCTGGAGAGTACCAAAAACCAGCCCTTCAAACTGTGTGTGTCACATAAACCCCATGTTGCCTTCAAGGTTCCCAGGCCTACATCAGGGGTTTTACAGTGTTTTGAGACTGACAAGGGCGCTAAATCCCCTGCTGGGAAAGAGCCCTGCACACAGGATGTGAAGAATAAACAAAAGCTTGAAAGCTCATGACAATGCAAAGATAGAAACAAGGCTGAGGGAGAGACTGCCAGGTCATGAAACCCAGGAGAGAGGCAGCCCCTTCCCAAGCCCTCTGGGTAGAAGTTCCCTTGGGCTCCTTTTATGAAGAAAAAGAATCAGATCTTTTCTAACCTGGCTTCAGGAGGGTGGCTCTCAGATCGTCCTTTCCACCATGCCTGTCCCTACCATCCCATGATCTCCTAAAGCATCAGCAGACTTGGGGGCCTGGCCCTAAGTAAGCAGAGCCCTCTAAGTGCTTGGATGCTCCCCTGATGTAGCCATCTCTTTCCCTAG
Seq C2 exon
GAAATATCTTGACGTGTCCAGCTGGAAGGTGAGGGCCGGCTCAAACAAGCTGGGTAACTCTCCGTCCTTGCCTGTGGCCAAGATCTTCATTGCTGAACCCAATCCCCTGCAACCCAAAGAGAAGGACATTGCCCTCGTTAAGCTGAAGATGCCGCTCACATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
A:
NA
C2:
PF0008921=Trypsin=FE(24.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGAAAGAGCCTGAAGAC
R:
CTGAGAATGTGAGCGGCATCT
Band lengths:
327-1260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]