RnoINT0153425 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119663253-119663787:-
Coord C1 exon
chr7:119663671-119663787
Coord A exon
chr7:119663422-119663670
Coord C2 exon
chr7:119663253-119663421
Length
249 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
CCACCCCCTCCCACCCCCAGACT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GAGTGCCCTGTGGGACATTCACTTTCCAGTGTGAGGACCGGAGCTGTGTGAAGAAGCCCAACCCCGAGTGTGACGGGCAGGCAGACTGCAGGGATGGCTCGGATGAGGAGCACTGTG
Seq A exon
GTGAGCCTAGTAGGCAGGGCCTTGCATGAAGGCCAGGCCTGGGGGGCGGGGCAGGAACCCTCAAGGGAGGCAGGAGTGGGATGTCACCATGTGTCTGTTCTGTGCTTAGCTGTCCCATCACCTTTTCCTGGGCCTATCTCCCCCACCCTGCCTCTCCACTACTTTCCTGTGTTTTCCTTCTCCATTTCTTACGAGCCTTTCTTCCTCCCCTCTCCTTCTCTGCCCTGCCCCACCCCCTCCCACCCCCAG
Seq C2 exon
ACTGTGGCCTCCAGGGCCCCTCCAGCCGCATTGTGGGCGGGGCCATGTCCTCGGAGGGTGAGTGGCCCTGGCAGGCCAGTCTCCAGATTCGGGGTCGACACATCTGTGGGGGGGCTCTCATCGCTGACCGCTGGGTCATAACAGCCGCTCACTGCTTCCAGGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=95.0)
A:
NA
C2:
PF0008921=Trypsin=PU(23.6=80.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGGACATTCACTTTCCA
R:
TGTCCTCCTGGAAGCAGTGAG
Band lengths:
279-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]