RnoINT0153426 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119661884-119663421:-
Coord C1 exon
chr7:119663253-119663421
Coord A exon
chr7:119662156-119663252
Coord C2 exon
chr7:119661884-119662155
Length
1097 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCCCCTGCCTCCCACCCAGCAT
3' ss Score
5.92
Exon sequences
Seq C1 exon
ACTGTGGCCTCCAGGGCCCCTCCAGCCGCATTGTGGGCGGGGCCATGTCCTCGGAGGGTGAGTGGCCCTGGCAGGCCAGTCTCCAGATTCGGGGTCGACACATCTGTGGGGGGGCTCTCATCGCTGACCGCTGGGTCATAACAGCCGCTCACTGCTTCCAGGAGGACAG
Seq A exon
GTGAGAGGGGACACCACAGGGCCTGGGGGTGGGCATAGGGAAGGCCATGGGAGGTACAGCGTGTGCAAACTACTCAGACAGAGGAAAGGGTAGAGAGAGTCCCCAAGTGGCTGCCAAGACAGATGGGATCTGGTCTGGTTCTGCCGTGAACATGCTGTATGTTGCTACGCTGGCTGTTCTGCCTTCTGTGTTCTCCCCTTGCTTTACTTTGGGAGCACTATTGTTGATTTGCTCCACTAACCCGATGACTGTGCTCCTCCTACATGCCAAGGGCTGTGCTGGACATCGGGGAGGTAATGGAGGAGACAAATGCCCAAGCTGGTCACAAGCCATTACCCCTACTATAATTTGAACCATAATGGGGAGGGGAGAGGGAAGCTCTCAGGGGCCATCTCACTGGCCCTCAAACCTCTTTCCCTGGTGATATGAATCCCTTTCCAGTCCTATCCGGATCTGAGCCCCAAATCCCTCAGGTCCCTCCCACAGAAGCCTGCAACCTTCTGCACCCTCTACTGGCTTCTGGGACCTGTTGTCATGGCCAGGAACACTCTGTCCACCTACTCTTCTTAGCTCTCTGATAATTTCTTCACTAAGCCCCTCCCAAGCCCCACCTTCTGAGTTTGCAAAATGGGCTACAGGGAAACACTGTCTCAGGCCTGGCACTGGGATCTTCTTGTGTCTCACTGGTGTCTTCTCAGAACATGGACGTAAAGAATGATCCCATCTCATAGATGAATCTTGAGGGGGAGGAGGGGTCAGATGATGCTCTTCATTACTTCAGACTGCCCTAAGGGAATGATGTCATATAAGCCACTCAGCTCAGAGTGGGTACTATGGTCCCATCTTGTTGATGAGAAAACTGAGGATGTGTCCCCTAGTTAGAAGAGAAGGTCAGGCTTAGCTAGGGAGAGATGAGGCTGGGGCTAGAGCTCAGGCACGAAAACACAGACAGGTGCTCAGTCATCACTGTATGTCAGCCAGGGGGTGGGGGTGTGGGAGAAGAAGGGAGAGATAGTGCAGAGGGAGATGGGAACTGGGCCCCTGGATGGGAGACTAAGCAGCTGAGCCATGATGCCCTTCCCCTGCCTCCCACCCAG
Seq C2 exon
CATGGCCTCCCCGAGGCTGTGGACCGTGTTTCTGGGAAAGATGCGGCAGAATTCACGCTGGCCGGGCGAGGTGTCCTTCAAGGTGAGCCGCCTGTTCCTGCACCCGTATCATGAGGAGGACAGCCATGACTACGACGTGGCCCTGCTGCAGCTGGACCACCCTGTGGTGTACTCGGCCACCGTGCGCCCCGTCTGCCTGCCCGCACGCTCTCACTTCTTTGAGCCAGGCCAGCACTGCTGGATCACAGGCTGGGGAGCCCAGCGAGAGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(23.6=80.7)
A:
NA
C2:
PF0008921=Trypsin=FE(46.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCTCGGAGGGTGAGTG
R:
TCAAAGAAGTGAGAGCGTGCG
Band lengths:
347-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]