RnoINT0153436 @ rn6
Intron Retention
Gene
ENSRNOG00000000184 | Tmprss6
Description
transmembrane serine protease 6 [Source:RGD Symbol;Acc:1307138]
Coordinates
chr7:119671938-119673355:-
Coord C1 exon
chr7:119673219-119673355
Coord A exon
chr7:119672051-119673218
Coord C2 exon
chr7:119671938-119672050
Length
1168 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ATACCTGTTCTTGGATTCAGACT
3' ss Score
6.56
Exon sequences
Seq C1 exon
GGTCTATGGGTGCAGCCGCCAGGAACCCGTGATGGAGGTGCTGGCGTCGGGCTCTGTCATGGCCGTGGTGTGGAAGAAGGGCTTGCATAGCTTCTATGACCCTTTTCTGCTCTCAGTGAAGTCTGTGGCCTTCCAGG
Seq A exon
GTGAGGGTCCCCAAGGATAGAGGGGGACACAGACAGGAGCCCTGGGCTCTGGTGGCATGCCCTATGCCTTCTCTGCCCTATTGGCAGTGATAGAATGACTCTGAAAGTCTTCAATGTGCAGCAGTCCCTTCCTTTCCTACCCCTCTTCCCCGTTCTCCATACCCTCCCTCCCCTCAGGGTCCTGGCAGCCCCCCAGCAAAGGTGTCCTGGCAGCCCCCCCCAGCAAAGGTGTCCTGGCAGACCCTCAGGAGGTCTTGGCTCATCCCCAGACTCAGTCATTCTTCCTGCCTCTCACTTCCCATCGCAGCCCTCCCTGCCCCCTCGCTGTCCTCCGGGTTAGCAGAATTAACTTGAGGACCCTGCCTGGGGTAGGGTTTGGGGCCTCCTTAGAGCTGCTTCTCTTTATGGCTGCATTTCCCCTGAAGGTGTCTGATGCTTTCCTCTTACTCTCCTGGGTCAGCCCTGGGCTCTCCACAGAACTGCAGCTGGCCCTGCACGGTGTGACAACCAGTGTTCTCTTGGGTTCTCAGGCATCACGGTCTCCAGGAAGAACCAAGGAAGGGTTAGGGGTTCTGGACCCTAGGGAGATGACCTGAGAATTCAAGGTCACTACTCCTGAGCCTCTTCCTGAGTGACTTGGCCAAGCCTCCCTCCTCTCCTGTAACTCTCATCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGTGTACATGTGTGTATGTGTTGTGTTTTATGTGTATGTAGTATCTGTATAGTGTGGTGTGGGTGGGTGGTGGTTGTGTGTACATGTTTGTATGCATATGTATCTGTGTGTGCATGTGTGTCTGTGTGCATGTGTGTGTGTGCCTGTATATGTGTGTGTTGCTGGGATGGACCTCAGGGCCTTCACATGTGTTAAGCAATGCTCTAGCATGGAGTTATGCCCTCCGACCCTCCCTCTTTGCTAAGGCAGCAGTCCTCCCTCCAGTATGCTTGTCACTCAGTGGATGGAACATGCTGTGTTCACTGCATCTGTACTCTTTTCCCCATTTTGTGGATGTGGAAACTGAGGCACACTTACATAGTCATGTTGGGCTCCGAGCTTGCTGTTGGTAGGTGCAGTGAGGCACTATGGGGAGGGCCAAGGGACCCAGCCTGATACCTGTTCTTGGATTCAG
Seq C2 exon
ACTGCCAGGTGAACCTGACCCTGGAAGGCCGGCTGGATCCACAGGGCTTCCTCCGTACACCCTACTACCCCAGTTACTACTCGCCCAGTACCCACTGCTCCTGGCATCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000184:ENSRNOT00000000200:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(26.9=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGGGTGCAGCCGC
R:
GCCAGGAGCAGTGGGTACT
Band lengths:
241-1409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]