RnoINT0153441 @ rn6
Intron Retention
Gene
ENSRNOG00000002145 | Tmprss7
Description
transmembrane serine protease 7 [Source:RGD Symbol;Acc:1304655]
Coordinates
chr11:60128400-60131743:+
Coord C1 exon
chr11:60128400-60128507
Coord A exon
chr11:60128508-60131632
Coord C2 exon
chr11:60131633-60131743
Length
3125 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CCTTCTGTCTTTCATCACAGTGA
3' ss Score
9.43
Exon sequences
Seq C1 exon
CTTGTCCTGCTGGATCTTTTAGATGCTCCTCCGGTTTATGTGTCCCTCAGGCCCAGCGCTGTGATGGAGTGAATGACTGTTTTGATGAAAGTGATGAACTTTTCTGTG
Seq A exon
GTAAGTGCAATACCATTTTGTTATGAATGATTGCTGCTGCTGGTTGACACCAGTCTTTGTAGTCGCTGCATGTCTGTTTCTAACTATCCCCAAACTCAATGGCTTAATGAACCCAATCATTTATTCTTGATCATGTATTCATGGTTGCATAGGCTCCCCTTAGCTGAGAGGCTCAGGCTCAAGCAATGGGCCATTCTATGCTAAGCTCCTTCCCGGTAGGGATCATGGCTATTCTTTATGGAACATTCTTTCAAGGAGCCATGGAGCTAGTAGCAAAAGCAAGGACAAGCGAACATAGACACATGGCTCCCCATAAGGGCTTGCAAGGCTTATACCATATTCTATTGCTCCAAAGAAGTCACATGGCTAGGCCCATAGTCAAGTGGGAGGGAAATTTACTTTGGATACCTTGGGGTCAGGGCATGACTAGTATACATATTCATACCACAGAGAATAATGTCTTATGGCTAATGACCTAACCTACCACAACCCTGTGTAAACACACAGAACCTTTACCTTGAGGAGCTCAGAATCTGCAGGAAGTTGAGTTCAGTATGGTTGGTTAAGCAGCACAGGTGTGGTGAACAGACTGGTCGGCTGTTTAGTCCATTTATTTATTTTTTTTATAGTTACTTCTTTTTTATTGAAAAAGGTTTTTGTATGCATTCTATTCTGATGCAGGTTTCCTCCCCTCTCCACACTCCTCTGAGAGCTTTATCATCTCTCTCTCTGCCCACCCAACTCCACCATCTTTCTTTTTCTCTTTTTAGAAAACAAGTAGTCAACCAAACAAAACATAATAAACAAAGGAAAAGAAACAGAGAGACAGAGAGAGAGAGGGGGAGGGAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGAGAGAAAACCCCAAACCTGTAAAAGCAAAAAAATGGAAACCTTAATATACAGTAAAAAGACCAGTAAGAGAAAAAAAAAGAAAATAAAAAGGAGAAAGGAAAGAAAAATGCCACTCAAAGCAATGGGAGACAAAGCGTTTATAAAAATACCATTAAGCTTATCTCGTGTTGTCCGTTTACTGCTTGACATGGGACCTGCCCTTAAGTGTGGCTAGTGAGACTCCGCTGGAGAAAACTGGTTCCTTCACAAGCAGATGTCAGTTAGAGATAGGTTCCTGTTATCTCATGTCCACTTCCCTTTCTGAGTGCTGGGATCTGGTCTGGCTGGAACCTATGAAGGGCTTGTGCATGGTGCCATAGTCTCTGTGAGTTCATGTGGGCATCAGTCCTGTTGTGTCTGGGAGATACCATTTTCTTAGAGTCCTCTGGCTCCTAGAGGCTCTCTGCCTCCTCTACTTCATACACATTGACTGCTGGTGATAACTAAGGGATGGAGACAATATATTCCTAGTCTAGATGGGTAATTTATAATCTCGATTTTTCATTGTTATTTATGACCTATTACTGTATCTATTTCTAGTTTATAGGACAATAGGAAGATAGCTTTAAAACAATATAAAGTTATTGGCAACAGTTTTTAAATACTCTTATAACAGAAATGGTAATGTAATATTTCCATGTCTTTAGAGAAATGTTTCACTTAATATAATTCAGCTATATAAAATTATATTCATAAAATGACCTCTGCATCCTTCAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACTGGGATCAAGCCTAGTGTCTTGCGTGTGCTAGGCAAATACTCTAACCCCGAACTACATCCCTAATCCCTTTATACACTTTTAAATAGACAAAACAAAATCAAACCTTCTTGATATATGGCACATTAGCAATCAATTCTATAAAATCTTTGATTTCTTAAGAAAATAGATGCTAGCAATTTTAGTGAAGGATTCTTTTCTCCATTACTGTTCTTTGCTCTGATGCTCCAGATGAAAGCTATTGGCATTCTTTTATAACGAGGATTAGGGTTTGGTACCATTGTGTTTCATTGCACTGTTTCTGGAGCTATTCTGTAGATGTCAGCTGGGTACCTTGGGCAACAACCTACTGCTTCAAGGCAGTAGTGTACTCCGCTCACTCCTGGGGGGCAGGGTCAGAGTGAGACAAGAAATACACTGGCAAACCAGGAAATGACAGTAAAACTGATACATTTCACAGTCTAGAAACCACGGAGAAACCTTCCTTTCAGAAGAAGATGCTTTGCTGATACACTGTGCCTGCTATAGAGGCGATTCAAGAAGTATGTTAAAGAAACAGTGGTGTTTAGGGTTTATTCCATCAGAATAGAACAAGTTTAAAGTGGTTTCCCATGTGGACCACGAGTCTGATATCCTTTAAATTCTCACCTTCAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAATTCTCACCTTCATTAATTAATTCACCAAGGTTTTTGTGAGCTCCTAATATTTTTGTTCAAGGACTTGAGGTAGAGAGATGAATGGGACAAAGTCCCCCATTTCAGTCCACTATACCTTTTTCGGGAGGTTAGGCAAGTTGAACTCAGATAACAGATGATGAGAATTAGTTCTCTTTAAAAACAAAAAGATTACTGCTGCCAGGCATGGTGGAGCAGATCTTTAATCCCAGCACTCAGAAGTAGAATCAGGTGGATCTCTTTGAATTCAGGGTCATCCTGGTCTGTATAGTGAGTTCCAGGTCAGCTAGGATTACACAGTGAGACCTTGTCTCAAAGAGTAAAACAAAATATGATTATTTATGAAGCAATGAGTTGTACATAAACCACCGATTTAAACACACTTACACCATAGCAAAAACAAGATATGACAAACCATTTTGTAAGAAATTACATCAAAGTAAGGAATTATACTAACCATTCCCTTTCTTCCTGGGATTTGTTATTTCAAGGTAAACACACTCTATCACTCTGTTGTATTTTCCATGTGAAGCTTCACCCCTTTAGAAGGGCACTATTAGCCACCAGAGAACCAAGCTGATGTCCTGTGTTCATGACCCTTCTGTCTTTCATCACAG
Seq C2 exon
TGACTGCAAAACCTGCCTGCAACACCAGCATCTTCCGGCAGCACGGCCCCCTGGTCTGTGATGGCTTCCAGGACTGTGAGGACGGCCAGGATGAGCAGAACTGCACTAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002145:ENSRNOT00000045521:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(94.6=94.6)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]