RnoINT0153459 @ rn6
Intron Retention
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11680680-11683242:-
Coord C1 exon
chr7:11682849-11683242
Coord A exon
chr7:11680852-11682848
Coord C2 exon
chr7:11680680-11680851
Length
1997 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CAGTACTCGCTCTTTCACAGACT
3' ss Score
5.47
Exon sequences
Seq C1 exon
GGTGATTCTGGTGGCCCCCTGGCATGTGAGGAGACACCTGGTGTCTTTTACCTGGCTGGCATCGTGAGCTGGGGCATTGGCTGTGCCCAAGCTAAGAAGCCTGGTGTATATGCACGAATCACGCGCCTCAAGGACTGGATCCTGAAAGCCATGTCCTCAGACCCCAGCTCTACGGCTCACCCCCACACCTCCAGCACACGGCTCATCCCTAGCCAGCCCCCAACAACCACAGCTGCTGGCCTCATCCCAGAGGCCAGCACAGGCAGACCTGCTACCCTCAGAGCCACCATCAGAGTGACTACTAGACCACTCAACACAACGTTGTCTGCCAGGAGTACCACCACCAGGAGACAGACACCAGCACCGGGCACCACTGTGTTCTCTCATCTGCCAG
Seq A exon
GTATGGTGACACAGGCTGTGACTCAGGCAGGTCCCTGTCACAGCAGTGCTGCTGAAGACACACCATCCCATAGTTCCAGAGCCCGAGTCCCATGTCAGGGCATTGCGGCAGCCTGCCCAGCCTGCAGAGGACGCTCTCCTCATGTCCTGCTGTGTGCGCCCGTGTGCTGACATCTGTGCAGCTATTTCTGTGTGCACGTGTGCATGCAGAGGCCAAAGGACGGCTCCACACAAGGATGTGAGCGCTGTCCTCTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCAAGCGCTGTCCTCTTAAGAGCACACTCCACAATGGCCTCCGAGGCAAGGTACCTGGCAAGTCCCAGCCAACCTCCTGCCTCTGCTACCGTCTGTTCTGGGGTCAAAGACTTGCACACAACCACGCTGTCTGACCCATCTCTCCAGCTCCTGTTTCTTTATTTACTTAATGTGTTAAGTATTGTTTGTCATTTTCCCTCCTGGCCTCTGACCACTAGCTGAGGCTGACCTTGAACTCCTGATCCTCCTGATGGTTGGGCCTAAAGGCAAACACGTGTTATCTCAGCTACATGACAGGAGCATCACAAACTCTAGGCCAGCCTGGGCTCTAAGGGGCTTTCAAGGCTAGTGTGATCACTTAGTGAGAATGCCTCTAATCAGCAAACAGGAGCAAGACAGAGCTCAGGGATGGAGCCCCGCCAAGAACCCCGCCCTCCACGAGGGCCTGGGGGCGTGGTCAGAGAGAGGAGGGGGAGCAATATCCGGAGGAAGGGAGAGAGGAGGACAGAAGAGTAATCCCTCACCTAAGCCTTTGCAGCTTTGGGTATGGTACTGCACACCTTAAGTCTTGGAGCTGAGGCAGGAGAATTGCCTGGACTTTAAGGCCCATCTGGCTGCATGTATAGTGAGATAGTGTCTCAAAACCCTGACTTTTTACAAAAGCTGGGAAAAGCAGATGGCTGCAGAGGTGAGGACATTACCACCTCTGTTTTGTGTGGTCAGGTCTCCCCCCAACCCCGAGCATGTGTGGGTGTAGCATGAGCAGAGATGGACAGGGTCCCCTGGCTAGGGTCCCTCAGGTACACAGGCAGTAGAGCTGGTGAGAGGCTGTGTTTCTTTCTACCTCCCACTGTCCTACAAGTGCCCCCCACCCAGGCACTCCAGCTGTGACTCCCTGCTGTGGGGACACTTGCCTTGGGTGAGTTCCTGAAGGTCCTAGGCTAGACCTTTCTCACCCCTTTCTCATTACTGTTGGGGTGCTGCTCCTAAGGTCACTATGACATCTTAGTACTGGGCCATGGAGGATGTTCTTCCACTTGAAGCAATATGGAGGCAGTGTTGAGCGGCTTTGGTGGCTTTGAAACAGCAGATGGGGTCAGAACCACATGCAGGGGCAGTGGGCCCTTGGGGTCACAGCAGAAGCCCTGTGACTCAGGACACCCCACACCTGAGCGTCTGTCCCATGCAGATGAGCACTGGCTTCCCCAGCCTGACATTCAGTTCAATCTGACCTTGACTCTGGCAATTGCAGTGACCTGGGACTCTCAGCTAGGGAAGCCCCAAGGTGGGACTCCAGCTCCGCGGGCACCGTGCCCACCGCTCACTTTAGGAAGGGGACTGCCCAGGCTGAGGACCTCTGAAACCACTCTCCTGCATCTCCCACTCCTCGGAACGGACCTTAGAAGTCTTCCTTTCCCTGGGTTCCTTTTGCGTTGGTTGAGGCTGGGTCAGAAAGGGACACCCAACCTAATGTCCGGGTGGTGGCCAGTGGCTGGGAAGGAAGCGCCGGTTGGGTGTTACACGAAGCCACCCTCTGCCCCTCCCACAGGGCACAGGGTGCTGGGTTGGGGTCCCAACCTCGGGGTGGGTAGGAAGAGGACGCTCTGCACCGGGTTCACAGTACTCGCTCTTTCACAG
Seq C2 exon
ACTGCGGCCTGGCACCCCCAGGGGCCCTGACCCGGATAGTGGGCGGCAGCGCAGCCTCGCTTGGAGAATGGCCCTGGCAAGTGAGCCTGTGGCTGCGGCGCAGGGAGCACCGCTGTGGGGCGGTACTGGTGGCCGAGAGGTGGCTTCTGTCTGCAGCACACTGTTTCGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429:ENSRNOT00000049221:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.477 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.2=34.8)
A:
NA
C2:
PF0008921=Trypsin=PU(19.9=77.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCCTGAAAGCCATGTCC
R:
CACTTGCCAGGGCCATTCTC
Band lengths:
342-2339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]