RnoINT0153585 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79821804-79824590:-
Coord C1 exon
chr5:79824318-79824590
Coord A exon
chr5:79822077-79824317
Coord C2 exon
chr5:79821804-79822076
Length
2241 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
CCTTTCCTCTCATCTTTCAGCCA
3' ss Score
10.69
Exon sequences
Seq C1 exon
AGGAGATCCCTCAACTGGGAGGCTTGTCCGTGACTGAGGTCAGCTGGGACAGCCTTACACTCAACTGGACCACAGATGATCTGGCCTATAAACACTTTATCATTCAGGTGCAGGAGGCCAACAATGTAGAGGCTGCTCAGAACCTCACAGTATCTGGTAGCCTCAGAGTTGTGGACATCCCAGGCCTCAAGGCTGATACCCCTTATAGAGTCTCCATCTATGGGGTGATCCAGGGCTATAGAACACCAATGCTCTCTGCTGATGTCTCCACAG
Seq A exon
GTATCATCTCCACTGCTCATGCTTAGTCCTCATGGTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCCCCCCGCCCCCTCAGATGACAAGGGAACTAGCTTTTCTTCATAGCCGATTCCTTTCTACGCATGATGCATGCCCAGAGCCCTCTCTGTGAGTAGGTCCATCATTCCAATGCCTTGGTCACAGCAGTGGTGAGCCCCGTAAGATACTGACACTTCTGGCCTCCAACCCCCACTCTCTTGGTTTACCTGGTCAACCCCACAATGACATCTTTACATGGTGGCCTCTATTCGAAGAACCAGCCTGTTGGTTTTAACTCCCATCTGTAAGTCTGGCAGAGAATCAAAAGCCCATCTTCCCCACTTGTGAGTTTTGATGGCACACAGGCCACTTATTTTAGAGACTCTTTTACTGTTTGAAAATGATGCTGCATTATTTCAAAATTTCTTGTGGAGATGTGTCCTACAGCACTTACACTTAACTGGTGATTCTTTGAAATGAAGCGAGCACAACAGGAGAACAGAATTACTCTCCTGTAGGCAATTCTGTCAGATGCAGAGTCATTGTTAGAACATCAAACTATCAAATTGTCTATCAAAGAGAGGAAACATCATACAATTCTGAATGGATGATATACCAAAGATACTGTTGTTCTTTAGCAGGACACCCAGGAGCCCTCAGAGCAAGAAATACCCCAGGTTATAAATGTAACAGAGTTAACACCCCTTTTGCTCTGTGAATCAAGAATTATTCCCTGAAGCAAGCTGCCAATCCCAATACTGGGGATGCATTCTGGTTTACTCATTACACTACTGCCGTTATAAAGCATTCAATGGGAGTCTGCCTGAGTGATCAGCTTTCCCTAACCCTGTTTTCTGTAGCTCGTCTTTACGGTGTGCCCTGATGAGTTGTATCTCATGAGACTGTTCCCCTTTTTTAGATAGTCAACTGTGACTAAAGTCTCATACCAAACCATTCCGTCTTTTTTGATTCAAAAGGACAACTCTGCAATTTTTGCCTCACTTGTTACGGGAACTGTCACTGCTATACCCATAAAACATAGGCAACCACAGTGTGGACAGCGACCTCAGGCTGGCCAGAGATTACAGTGGAGGCTCTTCTGAATTTTCCCCAGGATGTTCTTGTCTAACATCCACAAACTATTCCATCCCAGAAGGCAGAGCAATCAATCATCCACCACTTCGGATCTTTCCTGCAGATCTCATGGTTTGGATGCCATCTGTATTTTTTTTTTATGGTACCAACATTCTTGTCTCCGACAAAGTTGGCCCATGGAGGGGAAAGGCTATAATTCATCTGTGAATCTGGGATTAGGGGTCTTTCCCCTCGCTACATAGATTGTACTAGCCTCACAAACCCCTCGCACATGCACACACTGCATGCTATATCACTACCTCTCAGAAAAGCAAAAGCACTGGCCGGACATCTCTCAAGCCAAATATTATTTCTTAGGGCTGTCTGAACTGTTTGGCTCAGCTGTCTTGGCTGCCATTGCAGGACTCGCCTTCTTGGCCCACATAGACATAAGAGAGAACATGCTATTTTAACAGATGATGAGAACAGCTGGCTGTTCCTTATCTAAAGTATGGAAAAAAATAATCAAGAGTTACCCTGAGAGGTGGGTGGATCCTTTCAAGTGACAAAATCAGAAGCCTAGAGGTCCCACCCAGGGAGGCCCATGCTGTCAGAATTATTTAGCGCTCATTTAGATAGATGGGCACTCTCTCAAAGCAAAGGGCTCTCTCAAAGCTGATGTAGGAATCCACATAATCTTGGTCCCTGAATGCAGCTCAAGAGCCTAAAAGCTGTCAACCCTCATATCTCTTGACTGATTGCCAATGACCCTGAGGCATGGCTCTTGGAGGCAGGTCCAGCTAAGATAAAGCCAATTCCACTGAGGCCAGGCAGCCCATCTGCCGTCCTGAGGTATCTTGCCAGGCTTGATCATGAGTGGCAAATGCAATGCAGAAAAAATCTAACAGCCATACCTTCCTTTGTTCATTTCTGTCTTAACAAAACCATTTTCTCTTTCCTTGGCATCGACTGGTAGTGACAGCATTACTTTGTCTCACTGTAACCCTGAACTATCAGACCTTCCTCCTCAGGCATGGCTCCTAACCACCTCATCCTTGAAACACAGCAAAATAACTAAATAATTTGATTTGTTTCTTTTTTCTCTCCTTTCCTCTCATCTTTCAG
Seq C2 exon
CCAAAGAACCTGAAATTGGAAACTTAAATATTTCTGATGTAACTCCTGAGAGCTTCAATCTCTCCTGGACAGCTACCGACGGGATCTTCGACATGTTTACTATCGAAATTATTGATTCTAATAGGTTGCTGCAGACAGCAGAACATAATATATCTGGTGCTGAACGAACTGCCCACATCTCGGGCCTTCCACCTAGTACTGATTTCATTGTCTACCTCTCTGGAATTGCTCCCAGCATCCGTACCAAAACCATCAGTACCACAGCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.185
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.0)
A:
NA
C2:
PF0004116=fn3=WD(100=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]