RnoINT0153909 @ rn6
Intron Retention
Gene
ENSRNOG00000002548 | Tnn
Description
tenascin N [Source:RGD Symbol;Acc:1306002]
Coordinates
chr13:77850590-77853237:-
Coord C1 exon
chr13:77852974-77853237
Coord A exon
chr13:77850721-77852973
Coord C2 exon
chr13:77850590-77850720
Length
2253 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAC
5' ss Score
7.48
3' ss Seq
ACGTGGCCTCTCATTTACAGAAA
3' ss Score
9.15
Exon sequences
Seq C1 exon
AAATTGACAGCCCCAAGAACTTGGTGACCAACCGAGTGACAGAGAATACAGCCACCATCTCCTGGGACCCAGTACGAGCCACCATTGACAGGTACATGGTTCGCTACACCTCTGCGGATGGAGAGACTAAGGAGGTTCCAGTGTCAAAGGACCAGAGTAGCACCATCCTGACAGGTCTGAAGCCAGGCATGGAGTATACCATTCATGTGTGGGCCCAGAAGGGGGCTCGGGAGAGCAAGAAGGCTGATACCAAGGCCCTAACAG
Seq A exon
GTATACACTTCCTCTATAACAAGGGCAAGGAGGGAAGCAGGAAGAATGGCTGCTTTATCTGAAGATGTTTTCCAAAGCAGTTCTCCACTGACCTTATGTATGTTGTATGTGTTACGTGTTCGTGTGTATGTAAGCATGTGTTAATGGGCATGGAGGTTAGAAGCTGACATGAGGTGTCTTTCTCAGTTGCTGTCCATATTGGTTTTTGAGATGGTCTTTCTTTGATTTGGCTAGGCTGTCTGGTCAGTAAAGCTCAATTGATCCTGCCTGTCTCTGCCTCCTCTGCCCTGCTATTACAGAAATGTGTTACTGTCCCTGGATTTCTATATGGGTAGTAAGGATCCGAACTTAGATTCTCATGCATGCGTCCACCAAGACTTTTCTTTAGCCTCATAGTTCTTTCTCTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTTTGCACATGAGCATGAGCATGCCATGGCACACATGTGGAAGTCAGAGAACACCTTTCAAGAGTTGGGTCTCTCTGTCCTTCACCAAGGTTCTGAGATTGAACTCTAGTTGTTAGGCTCAGTGGCAATCACCTGCCAGCAGAGCCATCTTGCTAGCCCCGATTTTCCAAATTTTAAAGACAACAACCAAGTTAGCATCTTCCTGCTTCATAGAAACAGGAAATTAACCAAGTCAGACATCCCGAGTCCACAGCCAGGGGACAGTGGTTAATCAAAGAGGAGGCAGAAACTGCCTCAAAATATGTTAATAGCTATGTGCTGATTTGATTCTGCAGGAAATTCAGTCTCTCTATGTGATGGATAGCAAATGATCCATGCCAGATGTTATGCTTTACAAAATCAAACCAAGCTGATATTACAGAGACTCAAAATTTGTCAAAACAACCTAATTCAAAACAACAGCTGTCTGATTTCTATTAAAATACTACAATTCAGTTTTCAGCTGAAATGCTACTGGGTAGAAAATAGCCCGGAGATGTCTTTTTGGGAAGTTCTAAATTAAAATCACCTTTTATGATTTTTTTCCCTTCAAAATGGAAATTTCCATTCATATCTTATTTGCTTAAAAATATGAACATTCTGACGAGCTTTGGTGGGAATTAGTATTTTTGCTGAGCTTTGGCTTTCCTGGTACATGCTCACACATCCATGTACATCCTCTGGTGTCTGCTTACACACCCATGCACTCCCTCTGGTGTATATGCTCACACACTCATGCATACCCTTTGGTGTGTGCTCATACACCCATGCACACCCTCTGGTGTCTGCTCACACACCCATGCACACCCTCTGGTGTCTGCTCACACACCCATGCACACCCTCTGGTGTCTGCTCACACACCCATGCATGCCCTCTGATGTGGGCTTACATGTGTACATCCTCTGGTACATGCACATATTTGTGCATGCCCTCTGATTTTTGTTCACACACTGGTGCATGCCCTCTGACATATGCTCACACACCTGTGAATTCTCTCTGGCTTTGTCTGTATCCTTCTTAGCCCCCAGCCCTGCCCCTTCTGTTTCTCAGAAAGAGTCTCACAGGAAGGTCTCTGGCGGGCATCAAGCTCTCCGAAGTCCTCCTTGCTCAGCCTCTTGAATGCGGGTATGGCAGGTGTGAGTGACCGCACTCACTTTCTTTTTAAATATATAAAAACCATCTCTTATTTCTGTACTGGATATTTTTGAAGGCCATACACTTAGATGCTTAAGAAATAAAATTTTGTATTTTTATACTAACGTAAATATATTCCAAGTCCTCTTACATATTATGGTTCCCAATCTCAATATATAACTCTTTGGGGGACTCTCAGTGCTAATCATTAAAAGCATGGCAGTTTTTCATTGCCTTTCCAGACAGGGAGGTGTCTTTGACCTGGGTTCTCTGTGCAGGGCCCTTTGTAATCTGTAGCTCTCATCTTTCCAAATCACCCAGGAAGCTCCACCACCATAGAGAGCCTGTGTCCAAATCAGTCTGTTTCACCACTCTGGGCATCTACTGGGGAAACGAGACCCAGAGTTTCTCCCTCTTGAGACTACCCAGTGCCCCATTCCTAGATCCTCTTGAATTCCACAGGTCTGTGCTTCGAGAGGCAAAGGCTAGGGAGACTGAGCAAAACAGGATTGCCAGCCGCTTGAAGGCTGTGAGAGATGGGACAACACATAAGAGGGAAAGAAAACAGATGACTTAAACTTGTGCATGTTTTAGGAAGAATAACTACGTGGCCTCTCATTTACAG
Seq C2 exon
AAATTGACCCTCCCAAAAATTTCCGTCCATTTGGTGTAACACATTCCAGTGGGGTTTTGACCTGGATGCCCCCCTCTGCTCAAATCGATGGCTACATTTTGACCTACCAGCTTCCAAATGGCATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002548:ENSRNOT00000003452:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.159
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=PU(51.9=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]