RnoINT0155125 @ rn6
Intron Retention
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74643453-74645191:-
Coord C1 exon
chr16:74645135-74645191
Coord A exon
chr16:74643507-74645134
Coord C2 exon
chr16:74643453-74643506
Length
1628 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTACTTTTCAATATTTTAGAAG
3' ss Score
7.46
Exon sequences
Seq C1 exon
TATGTCGTATCAAGATGACATGAAATCGTCAAATTGCATGGACCCCACCAGTGAAAA
Seq A exon
GTGAGTTAATATATATATACATAAGTATGTGAATGTGTACATGTGCATGTACATTCCTATAATGACATGTACACTTGACAAACATGAAACAATAAAAGACAGAAGCTGACTGTAAATGACAGTTGGATGGGACATACATTTCTCACCCCCTAAAGCTTAAAGAACACGGAAAGAAAATGTACGGAAGGGCGTGCGTGCTGTGCAGTCTCATCTCCAGGGTATGATGTGGTGACATCACAGTCGCTGTCGTTGCCCCCCTTGAGTCTGCATGAGCTTGTGCCCGAGAACATCCATTCATGGGAGGCAGGGGAAGAAGGGCTGTGAGGTCCTGTGTTGTCTGTTGATGGCTGCTAGAGAAGGAATCACTGTCTTCAGACTGTGTAGCCACAGGGGAGAGACCCAATACCCCACTGGCTAGTTCCAGACCCATGCCTACGTGGGCGACCCTGATTAAACTCAGTGTGTCACAGAACAGAGGCAGAGAGACATGGAAGTCATAAGGGGCTTATCTGGGGAGAAGGACTGGGAGGGATGGGAAAGGGGAAAGCGATGAGAGAGGCCAGAATGCGCTCTATACATACATGACATAGTCAGAGAATAAACATAATTAAAATAAGGAAGCCGAAGTCTATAAAGCTCTACCCTCAGGTGTACATGTGACAAAAACCAAGTGCTTAGTTGCTGTGTCTGTATAAATCTCCTCAGTGAGATTCTTTGGATGGGGGGAGGGCTGCCAGTACTTCTCACCCTTAAAAACAACCAATACGTTGGAAACGATCATATTTATTAAATGAGCTACTAACAGTGCTGACTAGAGAGAGAGAGACTTCTATTGGAGCACAGAGACAGTGGTGGGCTGGTCGCAGTGCAGAGCTCAGCAGAGAGAGATGGGCCAGTGAGACCTACCCGTTTCCCTCACGGTTCAAGTTCTCCTGCGGGCAAGGCTGGTGCCCACGTGAGAATTCACCATTAAATTAGATGGAGCCACTGCCTCCCATCGACTGCTACCTCGTCCTGTCTCCCGGGGAAGAGAGGAACACCAGGGTTGAAAGTCAGAAGGAGGAAGACAGAGTTAAGACTCAGGAGTTTAGATGTGGTACGAGAGCTGTGTACCTCTAAAGTGTAGTTGAGTTAGGAATAAACACACCAATGAACCATACACTTTGGAGTTAATGGATGCATTGCATTTTTTTTTGAGTTTTTGAGATTATGTTATAATTAAATTTCTTGCTTCTTCCCTTTCCCTCCTTCAAACCCTCCCATGTGCCCTCCCCATTCACCTGCAAATCCATGGCCTCTTCTTTTATTATTATAATATATATGTATGTATATGCATATATATTCCTAAATATAACCTGCTCATATATAATATTACTTGTATGTATGTTTTGGGGGCTGACCATTTGACACTGGACAATCAATTGGTGTGCTCTTCTCTGAGGAGGACGGCCTCTTTCTGTCCCAGCTACCCTCAACCGCCTGTGACAGAGAAATTACAGATTGTTTATGCATATAAAATCAGCTAACAAATAATAAGGGCAGTAAATATAGTTATTTGATTCCCCCAAACGTAATTATATTTTACATATAGGCACTTTTTACTGACTATGTACTTTTCAATATTTTAG
Seq C2 exon
AAGATATGGAAATGATTCGTCATTATACACCATTGACGGAACTTTGAACAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837:ENSRNOT00000034670:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]