RnoINT0155126 @ rn6
Intron Retention
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74638017-74643506:-
Coord C1 exon
chr16:74643453-74643506
Coord A exon
chr16:74638065-74643452
Coord C2 exon
chr16:74638017-74638064
Length
5388 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TATCTGTTTTTATCCTTTAGCAC
3' ss Score
8.97
Exon sequences
Seq C1 exon
AAGATATGGAAATGATTCGTCATTATACACCATTGACGGAACTTTGAACAACGG
Seq A exon
GTGAGTGAACTGAATTAAAAGCATACACTGGGGCAGTTCGTGTGGTGGCGCTAGGCACTGCAGCTCCGTGACAGATCCAGCATCCAGCGCCTCCCACCCCTGCTCCAAGAGGCCCAAGAGGAGGTTAAGGGTGGAGCTCTGAAGGTGGAGCCCAAGAGCTGCTCCGTGAGCCTGTAGGCTAAGCCCGCCCCTGCCAAGGCAGATGCAAAGCCGAAAAAAAGTCTCAGGAAAGGATAAATGATCAGACAAAAAAGTGCAGACAAAAGGGACGTGGGGAGCAAAGGGCAGACAGGTTGAAGTGGTTGACCAGCAAAACACACATCTGCCTTCAGAAAATGGAGACGGAAAACCAGAGTCCAATCTCCGGAAAAGAGAAAGAAGCCAAGTCCGATTAGGCATGCGTCACGTGGGTCAGTGGTCCCCGCCTCCCTTCTTGTACAATCCAGAGGAATATCTTTATCAACTATTTTGTAAAAGCGAGTTTTTTAATAGCTTTAGAAACATTTTGACAAGGTGAAGGAATCCCACCTCATCCCATTTTTTAAGTGTAATTTTTTTTTTAAAGAGGTTAAATCTTTTGCTGGCTGTCTATTTTTTGGTACAACCAGAAAATATCAGGATACTGAATCAGGAGAGGCTGTGACTGTCTCGGGGGTCACCATAACATTACATAGAGGGGGGTAGTTTTATATCCCACGGTACAAAGCATCCTAAATGGCAGTTTGGGGTCTCAGTCGTGCATTCGTGTCTGGAATATTTTCAGTTATATCTTGTCCCGTGTTCCTAGTAGAACCATTCCGTAACAAAGCCAGTCTTTGGTCCTCGCCCTGTCAGAACTGTGACATCTGTGGTCATGGCAGTCCGTTTTCCTAACAGTTGTGACAATGCCCTGTGAATGATGGAGATTCTGGGTATGTGAGTTGGTACTGTGAGCTGGTGGGACTGAGGAGTGTGAGCATTTGGTTGTTATGAGAGACCTTGAGGAAACTTGCCAAGCTTAAGACTGGACATCACGGGAATAAGCTCTAAGAGAAACCACAGGCAGCTCTTCCTCTGGGCACCTGGACACAACCTATGGCTCTTCAGAGTTTGGGTCCATGTGTTAAGAAGCGGAATGTCTGTGTACTCTGCTCCTTGACCAATAAAATCTCGGTTGTGAAAGAGTTAAAATAACCCACCCATATATATTTACATATATACACATGTAAATACATGTGTATTCATACACAGACATACAAGCTTCTAACATCATGAGTTTTCATATATATACATATTTGCACATAATACATAAATTTATATAAATGCATATATTTCACACACACACACACATGAAAAAACACACAAACCCCATAAAAACCATGGAAGAAGTTGAGATTTGAGGGACCTACCTCAAGAATATCTTTGACATCATAATGCCTTTTAAACTGTTTCTAACTAGTCTCATTATAGGACTTGTAGTTGACTGAATTTATTTTAAAACAAAACAAGGAAAAAAGAATCCAGACAACCTGTCACTTTAAATAGTGGCAAGTCCCTTAGGAAACATTCAGAGTTCCTTTAAGAGACTAGATTAGTGGGGATGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGACTAGATTAGTGTGAGCTAGGAAAGGAGAGAATCTGATTGGGAGAAAAGAAGGAGCGTGGAGAGACAGAGACAGACAGAGAGACACAGACAGACAGAGAGAGGAGACAGAGACTGAGAGACTGACAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGGACAGAGATAGACAGAGAGACAGAGACAGACAGAGAGACAGAAAGAGGCAGAGAGACAGGGATAGAGAGAGGCAGAGAGAAACAAGAGAGACAGAGACAGAAAGAGACAGAGAGACAGGGATAGAGAGAGGCAGAGAGAAACAAGAGAGATGTCAGACAGACTGACACACAGAGGAGACAGAGACAGACAGAGAGATAGAGACGCAGAGAGAGACAGAGAGACAGAGAGACTCAGTGTCCCAGGCCTCCCCTATCACTGTTCAGCAGGTTCTTGGCTATTACTCATGCAGGAAAGACAGCATGGCTGGTGGGTGTAATGATGTGATAAAGGCTCTTGATAATCATAAATCGAGACAAGAAGGTGGTTTCTGTATAATGTGCAGGTGAGATCCAAGACAAGTACAATGGAGGAAGACCATTACACTTTGAGATTAAAGTAACCCTTACTCACTTCTCTTGGATTCTTCTCCATTTTTACAGATTTGAGGTATTCAAATAAATCTCACATTCAAATTCATGACATATACATGAATATTGGTATTAAGTTATAGAACAATTGTTACTAAATAAAATGTAATTTTAGAATTATATGTAAAAATTGAATGTAAAAGAAAGTTTGCCTTATAATTCAGGTATGATCATGTGTTTTCATATCCCTTTAGCCCACATGCTGATACGTCGCTATCAGTGATATTTGATGGAATCACCAATTTAATAACATGAGTTATAAGACATAAATGAAGACATGTATAAGTGTGTTTATGTGTTCTCATCTCTATAATATGCTTGCACACATACAGACCCAAGCATTAGAACTGGTGATGTCGAGGGTGGAATTTGCATTCCAAGGGGGCATCCATGCATGGAAAGACAGAGTATCTTTAAACTGTTTCTAAACAGGCTTCCTGGGGTGTTTGTTGGGGACAGTCTCTTTAATGTAGTTCAGGCTGAATGGGAGAGGATCTCTCTCAGAAGAATGATTCTCCTCATTCGCGTGTTGTCATTCTGGGTTTGTAGCAGTCAAATGCTTAGGACTCTGACTTTTATCTGTTGAACGTTGGCTGAATGTGAGAGAGACTAATTGGAGCTAGGAAGAAGGGGCAGTAGGAAGGATCAGAGGGGCCTTTGGCCAAGAAGAACAGAGCTGGGGATCCTGGAAGAATTCATCAGCCTGTAGAACTCTGCCTCCATGTTGAGGTAGGTACCCCAAACACAAACCTACCATGCCCCCACCCTAGGCCTTTACTCGAACTTACATAAGAGCAGAGAAACTCTATGGAGCTAATAGTAAGGGGTAAATGCCTGGTTCATGGATAGAGTGGAAGGAATTTGTACCTAGAAACTGCATTTGTAGTTGTAGTTGGAAAAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAACAACAATAATTTGAAAGCAGAGAACTGACGCTTGGCTAAACATCAGACAAAGAATCTTACTGAACTTTTTACCAGACAAGGTCTGTCTATTGCAGATAGACAAAATTTAAAATTATTTAAAATATAAAGTGTACCTTGGTGGTAAAGCGATGGACGTTTCAGAATAACTGATTATGTGTTAGTACAGGTAATTTGCAGGTAAAGCGCAGGAAGTCACCTGATGTTGATCATATGCGTTCTTAAATACTGTAGCACTTCCCTATACGAACTAGTACCTGGGGATACATAATAAATGAAACAAGAGGCCTCAGTGTGCCAGTGAAGACCCTTGGACAGACATGGATGGGTAGATCTAAATTTATGCATGGGGGTGGAGCAGACACTCTCACACATCTACAGAGAGAGCAGCTTTGGTCACTGCGTCCTTCCTGTCACCTCCTAACTGTTGAAAGTCTGAGCAATTGCCAGCTAAGCCCTAAGGAAATGTTCTGTATGCTTGTGTGTGACACTCTGCTGGGTTGGATGAGGGGGAAAGGAGCCAAGGAGGGACTCGCAGAAGACAGGGGTCATGACATGGAAAAACATTCAGCAACAATGATTAGAGGTGATGGACCTTAGATGTCCCCCAGAAGGGCACTGCCACCAAGGAAGGCTGGCATCCTAAGCCCTGTACTCTGCACCACAGATGGAGCGCGTTCCTCAGACCTATAGACACTTCATTTCACTTCATATTTTCACCATAAATGAAACTAAGGAAGGCTTGAAACTGGTAAGAAGAACAAATGTCTGTAAACTGTAGCTGAATTTTAAATAAATCCTATAAAAAATCCTGTTCTGTGTTGGAATTAAGAGAACGGTTACCTAAATGTAGACAAGTTACTATTTTTACAATCCCATGAGATTCCTTACCACCATGTAGACATAGCCTCTTTTCTGATATAAAAATACCAAATTCGAATCAGTGATGTGCGCAGATATTTAGAGCTCATTCAGTTCATGACTCAGAACTCAGAATTAATATGGTCGCCTGGTTCCAGAAGATATTTATATTTAACCTGGGATCTGACTGTACTTCCAAATACTGTAGCTCACACATGAATGAATTGTGACGGTCAAGTTACATGTTAATTTTAGACAGCACACACACTCACCCGTAAACACATAAGGACACATGCCTCCACGGATATGCACACACATGGTATACCAAGTAGGGTCCTGAAAAAGAAGGGAAGGCTCGGCTTTGTAAGATCCACTCTGCACAGAGTTCTTGACAATACAAAGTGCATTTGTCACTGCGTCTAAATGTCTGTGGATAACTTTGATCAAATTGGTTAAAAGGAGACTGGATCATCAGGCTGCCTCTTCTGGTCTACGTGAAAGGAGGAAGTACAAGCTTCAACCAGTTTGTACGCTGGCAGAGGGTCATAGCCAATCTGAACTTAAAAGGGTCTATGAATTTATAGGTTTTCATTATTACAGTTTACTTTCAACTCACGTAATGACATGATATTATTTATCTATGATGGAATCAGCAAGAAAATGTGTGTGTGTTATAAGTTAATCAAGAAAACACACACGCAACAAACACATTTACTCGCAGAAACATGAAAAAGCAAGTAAGAGATTAATATCTCAAGTGGATGAAAAAACCTTGTTTACAACAAAAAGAAATTAGCAGCAGACAAGGAGCACTGTAACTCTAGGTATGAAAAAAATGGAACTGATGAAAGTTTAGTCCGTGCCTTGCCCTCCAAACATCCGCCACCACTTAGAACTAATGCTCCAGAGCTCAGTCCATCACTGTATTGGATGGAAACACCGCCTGAGGTCTTGGCTACCTGTTTATATCTCACAGTCAGCAAAGGGGGGTAAAAAGAAAGGGATAATGGGGGGGACTTGGAAAAGAGTGAGATTGAAGATCCGAGTGCACAGAAAAGGCCAACAGTTGCTAATGTTATGTCAGGCTTAACAGTAAAAGTGAAACTGTGTGTCAGTCTTGAGTTACTTGTATAGGACGACTCATTATAATCACGCAAAGCAGCATTTGTATGGGAAACCTGGTATTGCATTCCAAACTCTCTGATCTTACCTTACTGTATCTGTTTTTATCCTTTAG
Seq C2 exon
CACAACCCTGTATGAAATGAATTCCTTGAGTGAATTATCGAAAGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837:ENSRNOT00000034670:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]