RnoINT0155256 @ rn6
Intron Retention
Gene
ENSRNOG00000047957 | Traf5
Description
TNF receptor-associated factor 5 [Source:MGI Symbol;Acc:MGI:107548]
Coordinates
chr13:110770190-110770646:-
Coord C1 exon
chr13:110770569-110770646
Coord A exon
chr13:110770265-110770568
Coord C2 exon
chr13:110770190-110770264
Length
304 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACAGGTTGTCCATTTTGCAGGTG
3' ss Score
7.17
Exon sequences
Seq C1 exon
GATCATGAGGAAAACTCGTGTCCTGCATATCCAGTGTCTTGTCCCAACAAGTGTGTGCAGACTATTCCGAGAGCTGGG
Seq A exon
GTGAGTAAACGGTCCTCCCCGGAGGGTGCAGGGCAAGTGTTTAGAATCCTGGCTTAAGGTTTGATGAGAACCGTAGATAGCCAAAGGCCTGGGGACTACACGATCCTGGGGATGCCTGTCGCTCTGCCTTCTGAGTGGTCTCTTGCACACTCTTTTGTTTCCATCCCAGCCCTCTGACTCATCAGAGTCTCTCCTCCTGTCCCTCGCTTCCCCCCCCCCCTCCCAAGTCATCCTTGGCTCCCTGATCCTACCAAATGGTCGGAGAATCCGTGTGTTTCCACAGCACAGGTTGTCCATTTTGCAG
Seq C2 exon
GTGAAGGAACACCTCACTGTGTGCCCTGAGGCTGAGCAAGACTGTCCCTTTAAGCACTATGGCTGCACGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047957:ENSRNOT00000071698:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0217613=zf-TRAF=PD(1.8=3.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]