RnoINT0159025 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116757242-116757644:+
Coord C1 exon
chr8:116757242-116757397
Coord A exon
chr8:116757398-116757478
Coord C2 exon
chr8:116757479-116757644
Length
81 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCATTTCCTCTCTTCCCAGAGG
3' ss Score
9.78
Exon sequences
Seq C1 exon
GTAGGTGCTGGTGCCATTGGCTGTGAGATGCTCAAAGGTTTTGCCCTAGTGGGCCTGGGAGTTAGGGATAATGGCGGTGTGACAATTGCTGACATGGACCACGTAGAACGCTCCAACCTCAGCCGGCAGTTCCTCTTCAGGCCCAAGGACACTGGG
Seq A exon
GTGAGTGCTGGCCCCTCTTGTGTCCCTGCCCTTGTGTCTCAGGTTGCTGTCTCCTAAGGTGCCCATTTCCTCTCTTCCCAG
Seq C2 exon
AGGCCCAAGGCAGAGGTGGCTGCAGAGGCAGCCCATCGCCTAAACCCAGACCTGCAAGTGACTTCACATACCTGCCCTCTGGATCCCACCACAGAGGACATCTATGACGACGACTTCTTCTCCAGGGTGGACGGCGTTGTTGCTGCTTTGGACAGTTTCCAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(35.2=100)
A:
NA
C2:
PF0089916=ThiF=FE(37.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATAATGGCGGTGTGACAA
R:
GGATCCAGAGGGCAGGTATGT
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]