RnoINT0163619 @ rn6
Intron Retention
Gene
ENSRNOG00000048699 | Vps37d
Description
VPS37D, ESCRT-I subunit [Source:RGD Symbol;Acc:1587769]
Coordinates
chr12:24652952-24655277:+
Coord C1 exon
chr12:24652952-24653123
Coord A exon
chr12:24653124-24655194
Coord C2 exon
chr12:24655195-24655277
Length
2071 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GTCCCCCCTGTGGTCCTCAGAGA
3' ss Score
8.32
Exon sequences
Seq C1 exon
TTCCAGGGTCTGCAGCTGGAGCGGGATGCGTGCTTGGCCTCTAACTACGCGCTGGCCAAGGAGAACCTGGCCTTGCGTCCTCGCCTGGAGATGGGCCGGACAGCCCTGGCCATCAAGTACCAAGAGCTTCGAGAGGTGGCCGAGAACTGCGCAGACAAGCTGCAGAGACTGG
Seq A exon
GTGAGGGGCGGCCCAGGAGACCTGCTTGGGGTGGGGTTGGCCTTGATTTGTGCCAGGTTCTTATGGGTGGGGCCGGGACATACCCACTGCTGGACAGAGTGTAGAGGAAGTTGGTTTTAGCCTCCTGGAAAAGTGAGGTGGTTGATCTATGGAGGAGCAGGCATGAAAAACTGGGCTGGGTCCCCCATTGCCTGTGATCCCAGTGCTTGGGAGGCAGAGGCAGGAGGATCACAAAACTTCAAGACCAGCCCTAGGTTAGGTAGTGAGTGCTTGATCAGACTGCTCTGTCTCTGGAGGGGAGACCCTGCCTCAAATACAAAACCAAAAGAGGCCTGATGGAGGTTCTGGGCAGTGGAAGGAAGGAGATGCAAGCTGGGCATGGTGACATATGCATATAATCCCACCGTGTGGGAGGCAGGCCCTGAGGATCAGTAGTTCAAGGCCAAACTTGGCTAGAGTGAGTTTGAGACCAGCCTGGGCTACCTAACTCCCTACCTAAAAAACAAAAACAAAAACCAACAACAAAATCTCATCAAGGCTGACAAGATGGTTCATTGAGTGTCTTTACACTAGGTGGCAAGCTTGAGTTTGATTCCTAGGACCTACAAGGTAGAAGGAGAAAACCAGGTCCTAGAAACTGACCTCTGACCTCTATGGCTATTCAGTGGTATGTGTGTGCCCACCCATATACACACAAGAACATAAATAAAAGTAATTTAAAACAGTGAACAACAACATCAAGGGGCTGGAGAGGTGGCAGCATTTGAAGGCACTGACTGTGCCTCCTGAGGACACGGGTTCAAATCCCCGGACCCATAGAGCAGCTCAACTGTTTGGAACGCCAAGATCTGACACCTGCACACAGACACACATGCAGCCAAACAGCAATGCAAATAAAATGAAAATACGCATATTAAGGAAAAAAAAAAACAAACCCAACATCAAAACAGAAAACGAGAAATGGGACTGGAGAGATGGCTCAGAAGTTAAGAGCACTGGCTACTCTTCCAGAGGTCCTGGGTTTGATTCCCAGTACCCACATGGTGGCTCACAACTGCCTGTAATTCCAGTTCCATGGAATCCAGTGATATCTCTGGATATCTCCATGGGCACCAGGCACTCACGTTGTACACATACATACATACATACATACATACGTACATATGTACCTACATATATACATATATACATACATGCAGGCGAAACACACACATGTGAAATAAAAATTAAAAAAAGAAAAACCAGAAAGAAACTCAAAGCTTGGAGTGCCCCCGTGGTCAGAGGCAGAACACTTTAGTTTTCATTCTAACATGTAGGACCGCCTCATGTCTGGCCTAACTAATGGATTGGGTGGTGGTAACCTCAATGTGAGGGGGCCATCTGTCCACAGACACTCAGCAGTGCCCACGTTATTGAACATCCTGAGCCAGGTACGGTGGCACGTGCTTGTAATCCCAGCACTCAGGAGGCTGGGGCAAAAATAACCACATTTGGTAGGCTAGCCTGGGCTACACAGTAAGACCTATCTCAATTGATGATGATGATGATGATGATGATGATGATGTCGGCGGCAGCTGCGGCTGGAGAGATGGCTCAGTTGTTAGAAAGGATAGGAGTTTGGTTTCTAGCACCCGTGTTAGTCAGTTCACAGACTCCAGCTCCAGGTTGGGTTTGACAACCTCTGGCCTCTTCAGGAATCTGCACACAAGTTCTCACACCCATACACAGACACATACATATAATTAAAACTAAATTCTTTTCTTTTTTTTAAAGAAGGAGAAACAACAGCGTAGTAAACAAAAAATAACCTGAACTTGTTTGCCCATGCCTCTAATCTCAGCACTTTGAGGTCTAGAGCCTGGAGGATCAGGAGTTCAAGCATAGCCTAGGCTACGCTGGCTAGCCTAGGCTATACAGTGAGATCCAAGTTAGAGGCTCCATGAGACCCTGCCTCAAACAAAAGAAAACAAAGCCAGTTGAGGACTTGGAGGCCACAGAGCTGGGAACTGTAGAGTCACCTGCAGTCAATGGGAGAGTCAGAGTCCCTGTCTGTCCCCCCTGTGGTCCTCAG
Seq C2 exon
AGAAGAGCATGCATCGCTGGAGCCCCCAATGTGCGCTGGGCTGGCTGCAGGCTGAGCTGGAGGAGGCTGAGCAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048699:ENSRNOT00000071569:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(38.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]