RnoINT0167908 @ rn6
Intron Retention
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21457148-21457931:-
Coord C1 exon
chr8:21457849-21457931
Coord A exon
chr8:21457257-21457848
Coord C2 exon
chr8:21457148-21457256
Length
592 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
AGGATGTGGTGACTTTTCAGGAT
3' ss Score
5.26
Exon sequences
Seq C1 exon
AGAGTCTGTTCTCTGATGACCAAATCTGCAGTCAAGAAGAAGAGACAGAGGGAGAAAGCACGCTGGGAGAAGACTGTGATAAG
Seq A exon
GTATGGGAGAAGACTGTAATAAAGCATGCTGGGAGAAGACTGTAATAAGGTATGAGGACCCCAGCCCATTGCAGGGAGAGGTCTTCGTCTTTCCATGCAGACAGACTTCTCTCTCAGGATTACCAAAGTGGCCCTGAGAAGGACTAATTCTCCAGGAAGAGGAGCTTTTCACATTGCTGTAATGCTGAATTATTATCATTATTACTCGTTAGTCTTGACCCTTTCTGTGTCAAATACTAGTTTTTTAATAGTGTTCTTAAAGATGATAAGTGTACGCATTATTTTCTCAAAAACTTTGTTTTCATATGTACCCCGTTTATAAAATATGTCCAGGAGTATTATCAAAGAAAGAGGGAAGAGGAAGAGGGTCAGGGTGTGGTGAGATAAGAGTATTAAAATGTGCCATTAAAGCCACTTGATTAGAGTAGATGGATGGAGAGTGAGTGTGGACACCAAGAAGTCGGGACTAGGGCCACCGAACTCCAGGGTAGGCATTGAGCTCCCTATCCTTATTCTTCTGAGAGGACGGTGGGGAGATTAACTTGATTGAAACAAGCATGTGTGGGTGGTTTAGGATGTGGTGACTTTTCAG
Seq C2 exon
GATGAGGCTGTGGATTGCGCTCAGGAAGAGTGGACCCTAAAGGATCCGACTCAGAGCAGCAGACCTGGTGATGTGGCAGTGGAGGACCACACAAACTTGGCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937:ENSRNOT00000038084:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.919
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTGTTCTCTGATGACCA
R:
CTGCAGTGGCCAAGTTTGTGT
Band lengths:
192-784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]