RnoINT0168280 @ rn6
Intron Retention
Gene
ENSRNOG00000003129 | Zfp496
Description
zinc finger protein 496 [Source:RGD Symbol;Acc:1304611]
Coordinates
chr10:45851534-45851984:-
Coord C1 exon
chr10:45851933-45851984
Coord A exon
chr10:45851731-45851932
Coord C2 exon
chr10:45851534-45851730
Length
202 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
GCCATACGATTATCTTTCAGGCG
3' ss Score
7.52
Exon sequences
Seq C1 exon
TTTCCGCGGCGGCCCGGCCTGCGCGGCCCGCCAACCGGGACGCTGCGCAGCG
Seq A exon
GTGAGTATACCGCGGCCGGGTTTCCCATGCCCCGCTGCCTGAACCCGGATCTTGCTCCCCACTTCCCGCGCTCTGAAACCCAGCCCCGCGCCTGGGTCCTGCTCCCTGTTCTCCTCTTCCCGCGTCCGGGCCCGGATCCCTGCTCCCAGAGCCGCGTCCTCATAGGTGCCCTCGGGGATGAAGCCATACGATTATCTTTCAG
Seq C2 exon
GCGTCTCCCTTCGCTCCCAAGCCCAGCTGATGCATTCTAGAGGATCACGAGACAGGGTTGGCCTGGCCAGGGACCGAGTCTGGCCCATGCATTGGAGCCGCCTTGGCCAAGACACCAGAGAGACCGAGCTGGAAGGTGAGGATCTGCTCCCCTGCTGTCCCCAGGCTTCGAGGTGAAGAGCCAGCGAATCTGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003129:ENSRNOT00000058308:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]