RnoINT0168407 @ rn6
Intron Retention
Gene
ENSRNOG00000024065 | Zfp575
Description
zinc finger protein 575 [Source:RGD Symbol;Acc:1305025]
Coordinates
chr1:81449197-81449730:-
Coord C1 exon
chr1:81449627-81449730
Coord A exon
chr1:81449361-81449626
Coord C2 exon
chr1:81449197-81449360
Length
266 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
GATTGATCTTTTGATTTTAGGTC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTTTCCCTAATCCTCCGAGCTCCCCAATTCTATGCCAGAGATGCGATTTAGCGACCAGAAGGACAGGGTGGACACAGCATCAGTAGGCTGAGACTAAAGACAGG
Seq A exon
GTAAGCCTCCGTTTCTACTAGAATCTCTCCCACTCACTGTACCCAAAGCATTTCTGGGACGGTGAGGCCAAGGGCACGCCCACTGCGCTCAAAGACCGGCTCCTGGGCTTGGGTGGCCAGGCCACTGTGATCTTTTTGTATAGCCCCGCCCACCCCAGATTTAGCGGCCCCGCCCACTCTGAGATAGCCCCACCCAATGAAAAGGTTAATTCTTGGGTTTATTTTCATATTCCCCTCCTAGTGTGTGATTGATCTTTTGATTTTAG
Seq C2 exon
GTCTCCACCCCTGTCTCCATGAACGTGTTAACCTCTGGCGCCATCCTCGCCCCTTGCCCTGCTGCCCCTTGGTTCCTTTGCCAGCAAGATGCTGGGTGGAAGCGTGAAGTCCGAGGCCAGGGTCTCAGAACCTAATCCCACTTCTCAGGACCCGGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024065:ENSRNOT00000035356:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCTAATCCTCCGAGCT
R:
CTTTGGTCTCCGGGTCCTGAG
Band lengths:
268-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]