RnoINT0168410 @ rn6
Intron Retention
Gene
ENSRNOG00000034184 | Zfp583
Description
zinc finger protein 583 [Source:RGD Symbol;Acc:1562044]
Coordinates
chr1:71251258-71251724:+
Coord C1 exon
chr1:71251258-71251266
Coord A exon
chr1:71251267-71251597
Coord C2 exon
chr1:71251598-71251724
Length
331 bp
Sequences
Splice sites
5' ss Seq
AAGCTGAGA
5' ss Score
0.41
3' ss Seq
GTGCATTTATATCATTTCAGGAC
3' ss Score
7.98
Exon sequences
Seq C1 exon
CTTGGAAAG
Seq A exon
CTGAGACAGAAGGGTTGTGATTTCAAGTCAGCCCTGAACCTCACACTGAGCTGTCTTTTTAAAAAGTTGGGGTTTTTGCCTCTACAAAGTATGGCCAATTTAGTTAGTGCTGACTCCTCCCTGCTGTGTTGTGTTGTGTTGTGTTGTTTGCTTATTCGTTTGAGACTGGGCAGGGTCACAATGGAGTTTTGAACTCACTACAGCCCAGGTCGTCCTGGAACTCGGGGCATCTGATCTCTGCCTCCTGAGTGCTGGGATTACGGGTGTGTGTGCTGTCTCCAGTTTTAACTGTTTAACCTGTGTGAACCAGAGTGCATTTATATCATTTCAG
Seq C2 exon
GACTTGCTGACATTTGAGGATGTGTCTGTAGATTTCACTCAAGAGGAATGGCAACAGCTGAGTGACACACAGAGAGACTTGTACAGGAAGGTGACATTGGAGAACTATAGGAGCCTGGTGTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034184:ENSRNOT00000039438:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]