RnoINT0168492 @ rn6
Intron Retention
Gene
ENSRNOG00000038622 | Zfp628
Description
zinc finger protein 628 [Source:NCBI gene;Acc:100359484]
Coordinates
chr1:72465341-72468335:-
Coord C1 exon
chr1:72468072-72468335
Coord A exon
chr1:72467877-72468071
Coord C2 exon
chr1:72465341-72467876
Length
195 bp
Sequences
Splice sites
5' ss Seq
CGGGTACAC
5' ss Score
3
3' ss Seq
TCTCTGATGCCTACTTGCAGCCC
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATTCACCGCAGTGTGCACACAGGCCTGCGGGCCTTCACCTGTGGCCTCTGTGGTCTGGCCTTCAAGTGGTCATCCCATTACCAATACCACTTGAGACAGCATACTGGTGAGCGGCCCTACCCGTGTCCTGACTGCCCCAAGGCCTTCAAGAACTCATCCAGCTTAAGGCGCCACCGGCATGTGCACACGGGAGAACGCCCTTACAGCTGCAGCATTTGTGGGAAGAGCTTTACTCAGAGTACCAACCTTCGCCAGCATCAGCGG
Seq A exon
GTACACACGGGCGAGCGCCCCTTTCGTTGTCCACTTTGTCCCAAGACCTTCACACACTCCTCCAACCTGCTGCTACACCATCGCACCCACAGCCCTGCCCCCAGCCCCGCCCCCGCCCCTGCCCCAGACCCCACCCCCACAGGGGAGACCAGCAGAGCTGGCACCAAGGTTCTGGTCTCTGATGCCTACTTGCAG
Seq C2 exon
CCCCGCAGCCCACCTGAGCCTCCAGCCCCACCACCCCAGCCCCCACCTGTGGTGCCCGAATTCTTTTTGGCTGCTGCTGAGACTACAGTGGAGCTGGTATACCGCTGCGATGGTTGCGAGCAGGGCTTCAGTAGCGAGGAGCTCCTCTTGGAGCACCAACCATGCCCAGGTCCCACTGTGGCCACCCAGCCCCAGGATGTGCCTGCCGAGCTGCCCCAGGCTGACTCTGCTCTGCAGCCCCCACCTGCCACTACTGGCCCTTCTAATTTTGCTTGCCTTCCTTGCGGGAAATCCTTCCAGACAGTGGCAGGCCTGTCCCGTCACCAGCACAGCCATGGTGCGGCCAGTGGACAGGCCTTTCGCTGTGGTAGCTGTGATGGTGCCTTCCCACAACTGGCCAGCCTGTTGGCTCACCAGCAGTGCCACGTGGAGGAGGCGGCAGCTGGACGCCCACCACCTCAGGCTGAAGTTGCAGAAGTCACCTGTCCCCAGGAACCTGTAGCCCCAGCCACTCCTGCTCCACCTCCTCCTCCACCTGCCCCAGTTTCTGCAGAGCGGCCCTACAAATGTGCAGAGTGTGGCAAGGCCTTCAAGGGTTCTTCCGGGCTGCGCTACCACCTGCGGGACCACACAGGTGAGCGGCCCTACCAATGCGGGGAGTGCGGCAAAGCCTTCAAGCGCTCCTCCCTGCTGGCTATCCACCAGCGTGTGCACACGGGCCTGCGAGCCTTCACCTGTGGCCAGTGTGGCCTCACCTTCAAGTGGTCGTCCCACTACCAGTACCATCTGCGACTTCATTCTGGTGAGCGGCCCTATGCCTGCACTGAGTGTGGCAAAGCCTTCCGTAACACTTCGTGCCTGCGGCGCCACCGGCACGTGCACACTGGCGAGCGGCCCCACTCGTGTAGCGTGTGTGGCAAGAGCTTCGCACAGACCTCCAACTTGCGGCAGCACCAACGTGTGCACACGGGCGAGCGACCCTTCCGTTGCCCGCTCTGCCCCAAGACCTTCACACACTCCTCCAACCTGCTGCTGCACCAGCGAACTCATTCTGCGGAGCGCCCTTTTGCCTGCCCCATTTGTGGCCGAGGCTTTGTCATGGCCGCCTACCTGCAGCGGCATCTGAGGACGCACACCCCAGCCACTACAACTTCGGGGACCACTGGCCCTGCTGTAGCATCGCAGCCCCCTACCCCATTGGCTGCAGCTCCAACTCCACTGGCCGCTCAAGATGTTCATGTTCTCCCTAACCTACAGGCCATACTTTCACTCGAAGTAGCTGGGGGCACAGCTCAGGCTACACCCCCAGGCCCAGTTGCCCCCAGTTCACAGACATTTCTCCTGGTACAGACTGCCCAGGGCCTCCAGCTGATTCCTAGCAGTGTCCAGCCCCCTACCCCACCACCACCGCCTCCACCCCCTAAACTCATTCTGCTGCCTCCTGCCAGTGCTGGAGGTATGGGCAATGGTGCTGCAAGGCCAGGCCCTCGGGCTGTTGGGAAAGCTGGACAGGGGACAGGGGTAGTGTGGTTTCCCGGCCCAGGTGGTCTAGGGGTGCAAGGAGGAGGCAATGCTGGGACTAGCGGGGGCGGGCAGAGCCTCATTGTTCTACAGAATGTAGGGAGTGGGGAGACAGGACCACAGGAAGTGAGTGGGGTTCAGCTTCAGCCAGCACAGGAAGTGGCCACGGTCCAACTACAGCCTGCACAGGAAGTGACCACAGTCCAGCTACAACCAGCACAGGAGGTGACTACAGTCCAGCTCCAGCCCCTGACAGGACAAGTCTCCAATTCTAGTGGAGGAGCTGTGGCTACCGAGGCTCCAAACCTGCTGGTGGTTCAGAGTGGGGCAGCTGAAGAGTTGCTGACCAGCTCTGGACCTGGGGAAGTGGGAGACAGTGAGGCCAGCGCTGGTATGGTTCAGGATGTCCTGTTTGAGACATTGCAGACAGATGAGGGGCTGCAGAGTGTGCTGGTGCTGAGTGGAGCGGATGGGGAACAGACTAGGCTCTGTGTGCAGGAGGTGGAAACGCTTTCGCCTGGACTGACCGAGCCAGCTGCCACTGACCCATCAGGACAGAAACTCCTTATTTTTCGTAGCGCCCCAGCTGCTGACCTTCTAGAAAGTAGCAGCGTTGCAGGAGGTACCACAACGCTGCAACTCCTGGCCCCACCAGCACCTGGCCCGGTCTCTGCCCCTGTGGGGGTGCCTGTAGCTCCCCCATCCCAGATGGTACAAGTGGTCCCCGCAGTGACTGGACCAGGGGTCATGCCTCCCCAGAACTTGCCCTCCATCCAGATAGTGCAGACTCTGCCTGCAGTCCAGTTGGTACACACGTTTTGAAGAGACCCAGTAGCAGCTCTGTCACAAACCCTCTTCCCCCGCAATTAACTGTTCTCCTCAGCTGGGCTGGGGTCAGCCCCAGAGTCAAGGGGGCTGCTGGCTGGACTTGCTAATAAAGACCCAGAATCTCCTCTTGGTTTTGTTTTCATGGGGAAGGGGATAGTCATAAATATAGCTTCTGCCTCAGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038622:ENSRNOT00000029136:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.504
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(91.3=23.9),PF134651=zf-H2C2_2=WD(100=29.5),PF134651=zf-H2C2_2=WD(100=29.5)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.3),PF134651=zf-H2C2_2=WD(100=3.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAGGCCTTCAAGAACTC
R:
CAACCATCGCAGCGGTATACC
Band lengths:
246-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]