RnoINT0168501 @ rn6
Intron Retention
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115653166-115653929:+
Coord C1 exon
chr4:115653166-115653249
Coord A exon
chr4:115653250-115653860
Coord C2 exon
chr4:115653861-115653929
Length
611 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
AAGTAGTCTGTTTTATGCAGCAA
3' ss Score
2.05
Exon sequences
Seq C1 exon
CAAAATCTGGAAAGAAGTCTCTAGAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTACAATAAACCCGTGACTGTATCAG
Seq A exon
GTAACCATGTGCTATCACTCAGTGGTTTTTTGTTTTTGTTTTTGTTTTTTTTTTTGTTTTTGTTTTTTTGGATTTTCTTGCTTTATATTCAAGATATATTTTGAAATTTTCTTTAAAATTCCTAAAGGCCTGTTTGAGATATCTCAGTTATTAAAATGTTGTTGAGTATGCAAGCATGAAAACCTGTATTTGGCTCCCAGCAACCCACATAAAAGCCAGGCATAGCACACACCTGTAATCCCAGTGCTGGGTTGGGGTGGGGACAGACAACATAGGCAAATTCTGGAGTTCATTAGCCAGCCAACTTTGCTGAATATCTATTTCTAGGGTCAGTTAGTAAGACCCTATCTCAAAAAATTAAGGTTTGAGAGCAATGGAGATAGCCGTGGAGATGTTGTCCTCTGACTCTGATATGTATGACACATATGCACATGTATGTTTGCACACATAGAACCACACAGCCTCAAAGGGATTATTTTGTTTTTCAAAGAAGTTTCATTAGCATTTGAGAATCTAAAGTGATGAAATTACTAGCTTAGATTCCAGTTCAGATTCATTAGTTTAATTATAGTATTATTTTCTTGAAAATTAAAGTAGTCTGTTTTATGCAG
Seq C2 exon
CAAACTCTGAAGTCAAGGCTAGTAGAGAAGACAAAGCCACTGGAAAGACTGCTGTGGAAACTACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501:ENSRNOT00000019617:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]