RnoINT0168725 @ rn6
Intron Retention
Gene
ENSRNOG00000050600 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr8:23195613-23196600:+
Coord C1 exon
chr8:23195613-23195928
Coord A exon
chr8:23195929-23196012
Coord C2 exon
chr8:23196013-23196600
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGCAGTGT
5' ss Score
-9.82
3' ss Seq
AGAAGCCCTACACGTGTAAGGAA
3' ss Score
-4.03
Exon sequences
Seq C1 exon
CGCTCACATAGAACAGAGACCACGTGAATGGGAAAGTTCACCCAGGGAAATCGTCACCCAGGTTCCAGTTCTTAAACAGAAGAATGTTCTCCCCGGAGTAAAACCCTACGAATGCAGAGTATGCGGGAAAGTTTACTCATGTTTGTCCTCTCTTAAAAGGCACACTCAGTGTCATAGCAAGCATGCATGGTGTGGGAGTCACATATTCGGAGGAACATCATACCAGTGTAAGGACTGTGGGAAAACATTCATTTTTCAAAGTTCATTTCGAATACACGAGAGGACCCACACTGGAGAGAAACCCTATAAATGTAAG
Seq A exon
CAGTGTGGTAAGGCTTTCAGCTGGCCCAGTTCCTTTCAGATACACAAGAGGACTCACACAGGAGAGAAGCCCTACACGTGTAAG
Seq C2 exon
GAATGTGGCAAAGCTTTCATTTATCACACTACCTACCGAGGACACATGAGGACCCACACTGGAGAGAAACCCTATAAATGTAGGGAGTGTGGGAAGACCTTCAGCCACCCCAGCTCGTTTCGAAACCATGAACGAACTCACTCCGGAGAGAAACCATATGAGTGTAGATGGTGTGGAAAAACCTTCAGATATTACCAAACCTTTCAGATACATGAAAGGACCCACACTGGGGAAAAGCCTTATCAGTGTAAGCAGTGTGGGAAAGCTCTCAGTTGCCTCACGTCTTTCCGAAGTCACGAGAGGATTCACACTGGAGAAAAACCATATAAATGTAGAAAATGTGGCAAAGCCTTTAGTTTCCCCAGCTCCTTTCGCAAACATGAAAAAATTCACACTGGAGAGAAGCCTTATGATTGTAAGGAGTGTGGGAAAGCCTTCATTTCTCTGCCAAACTTCCGGAGGCACATGATAATGCATACTGGAAATGGGCCTTACAAGTGTAAGGAGTGTGGGAAAGCCTTCGATTGCCCCAGCTCCTTTCAAATTCACAAGCGAACACACACGGGAGAGAAGCCCTATGAGTGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050600:ENSRNOT00000071703:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(65.4=16.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=3.6),PF134651=zf-H2C2_2=WD(100=13.3),PF134651=zf-H2C2_2=WD(100=13.3),PF134651=zf-H2C2_2=WD(100=12.8),PF134651=zf-H2C2_2=WD(100=12.8),PF134651=zf-H2C2_2=WD(100=13.3),PF134651=zf-H2C2_2=WD(100=13.3),PF079757=C1_4=PU(51.1=12.2),PF134651=zf-H2C2_2=PU(65.4=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACCCACACTGGAGAGAA
R:
CCGGAGTGAGTTCGTTCATGG
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]