RnoINT0168770 @ rn6
Intron Retention
Gene
ENSRNOG00000026874 | Zfp956
Description
zinc finger protein 956 [Source:RGD Symbol;Acc:1304879]
Coordinates
chr4:77633328-77635362:+
Coord C1 exon
chr4:77633328-77634014
Coord A exon
chr4:77634015-77635194
Coord C2 exon
chr4:77635195-77635362
Length
1180 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGTTGTTCTTTTGAGACAGGGT
3' ss Score
3.26
Exon sequences
Seq C1 exon
AAACATGGCTGGCTAACAAGAAAAGGACCCTGGAGGGGATGTCCCTGGCACCAGAGCCATCCTGGGTGACTGAAGGGGGACCTGGCAAGGAGGATTTCAGCGAGCAGGGTACCTGTGGTGATCTGCTCCCTGTTTGCAGAGAGAGAGAGGCCTCCTCCCTCCCTCGAGGCTCTCAGAGTCAGTCAGTGTCCGCTGCTGAGGGCACTGAGAATGGCCAGAACTTTAATGTGCAGGAGCTCAGCAAGCAGCTCGAGTACTCACACCATGGATCGCAGCCCTTTGCCAGTCTCCAGTGTCCCCAAAGTGCTGCACAGCAGGTCACTCTCACTAGGAATCGTCGTGCACCCGCAGCCCAGCGTGCCTACACCTGTGTCCAGTGTGGCAAGAGCTTCGTCCACCAGTCGACACTTACCACACACTACCGCACACACACTGGGGAAAAGCCTTACAAATGTGCTGAGTGTGAGAAGCGGTTTGGCCGCCTGTCTACACTGCTGGAGCATCAGCGTACCCACACTGGAGAGCGGCCCTTCCCCTGCGCACAGTGTGGCCGTCGTTTTGGGCGCCTGTCCACTCTGGTGGAACATAGGCGCACACACACGGGTGAGAAGCCATTTCCATGTACCCAGTGTGACAAACGTTTCACACGCCTGGCCAACTTGACCGTGCACCAGAGTGTGCACTCAG
Seq A exon
GTGAGCATGCTTTCCAGTGTACCCAGTGTGGCTCATGCTTCACGCACAAGCCCAGTTTCCTGCGACATCTGCGTAGCCACTCTCAAGAGAAACGCTTTACCTGTGGCCAGTGTGGCAAGAGCTTCACCTGCCGCTCCTGGCTGGTACGCCATCAGAGCAGTCATGCGCACTCAGCATCCTCTGCTTATGTGGCTTGTGAGAGGAGCTCACCAAGTTATGTGCCACCTACAGGTCTCTTTAAAGGTTCAGCCAGGGGAAAGTTCTCCAGTGACCCTTCTGTCTCGCCCAGATCCAAGGACACTAGAGTCAGTCAGGACCACAAGGCATATGGCGGAGGTCAGCAGCTCAGCGACCATGATCAGGAAAGTCTAGTGGGGTCTCTGCATAGTTGTCTGTCTGTAAAGATGGAGAATGCGGGGTAGCACCCAGAGAGCTCTGTAACGAGGCCACTAGGACACAGGGCTTCTTCCCTGTGATTCTAAGTTTCTCCTGGGTCAGATGTATGGTGCCTGCCATCTTCTTGGCTTCCCAGGGCTTGGACTGCAGGTGCTAAGTGCCCCTGGGATTCTTCCTACAGGGAAGCTTCATGCACACAGCAAATGTTGCAGAAACAAGCAGCTCGACAGTCCCCTGAGACCTTGGTGGCTCCCACCACCATCTTAGCAATTTATGCAGCAACAAAAGACGTGTTAGGAAAGTCACAGTTTTGAGAGTTGCTCGGCCAGAAGCTGAACAACTCAAGCTAGTTTCCAGGATTTCCCTAGGACAGAGCTGAGGCTGTGACTCAGTAGTGTTCATTGAGCATGCATGGACGGAGCCACGGCTAGATCCCCAGCGTCAAATTATCTGGCCATGACGGTATTTGCCTGTAGTTCTTGTATTTTTGTAGAGGCAGGAGGAATGGAAGTTCAAGGTTGTGTTTGGCTACGTGAAAACCCTGTTTCAAAAAAATATCCTTAGGAGTTCAAAGTCCGAGTTGTCAGATAAGCATCTCATCAGTGGCCACATATATAACAGCATGTGTGTTTCCAAGGACTCCCACTGGAGGGGCTGGGACTGTTAGTGTCATTGTCCACACTTGGGAGGAATGTGGGAAAACAGGCCTGTGCTGCTGCTTGCATCTGGGGCTGGGTTTTACTGAAGGTCTGATTACCCTTAATTTGTTGTTCTTTTGAGACAG
Seq C2 exon
GGTTTCTCTGTGTAGTGTCAGCTGACCTGGAACTTGCTCTGTAGGCTGCCCTTGAATTCACAGAAATCTACCTGTCTCTGCCTCCTGAGTGTTGGGATTAAAGGTGTGTACCACTACCACCTGGCTCCATATTCACTTTAAAAACCTGTAAAAATAAACGTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026874:ENSRNOT00000059263:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=11.3),PF134651=zf-H2C2_2=WD(100=11.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCCAGTGTGGCAAGAG
R:
AGTTCCAGGTCAGCTGACACT
Band lengths:
354-1534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]