Special

ENSG00000115414 @ hg19

Biotype
protein_coding
Gene Symbol
FN1
Description
fibronectin 1 [Source:HGNC Symbol;Acc:3778]
Coordinates
chr2:216225163-216300895:-
Assembly
hg19
Other assemblies
hg38

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
-
12.16
38.25
0
Alternative 3'ss
75
chr2:216237024-216237098
-
87.84
38.25
0
Exon Skipping
267
chr2:216236832-216237098
-
83.03
42.32
1
Exon Skipping
270
chr2:216245534-216245803
-
48.19
95.54
25
Exon Skipping
273
chr2:216257654-216257926
-
28.04
100
10
Exon Skipping
159
chr2:216292903-216293061
-
100
0.05
6
Exon Skipping
180
chr2:216288869-216289048
-
100
0.07
2
Exon Skipping
153
chr2:216286814-216286966
-
99.95
4.42
5
Exon Skipping
270
chr2:216251412-216251681
-
99.98
0.45
2
Exon Skipping
165
chr2:216248743-216248907
-
99.98
0.92
4
Exon Skipping
107
chr2:216236632-216236738
-
99.98
0.52
1
Intron Retention
2266
chr2:216232751-216235016
-
2.68
67.63
0
Intron Retention
342
chr2:216226350-216226691
-
2.38
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000026193 Fn1 1-to-1
Mouse mm9 ENSMUSG00000026193 Fn1 1-to-1
Rat rn6 ENSRNOG00000014288 Fn1 1-to-1
Cow bosTau6 ENSBTAG00000008300 FN1 1-to-1
Chicken galGal4 ENSGALG00000003578 fn1 1-to-1
Chicken galGal3 ENSGALG00000003578 FN1 1-to-1
Zebrafish danRer10 ENSDARG00000006526 fn1b 1-to-2
Zebrafish danRer10 ENSDARG00000019815 fn1a 1-to-2
Fruitfly dm6 FBgn0033312 CG8642 1-to-1
Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"