Special

FBgn0000286 @ dm6

Biotype
protein_coding
Gene Symbol
Cf2
Description
The gene Chorion factor 2 is referred to in FlyBase by the symbol DmelCf2 (CG11924, FBgn0000286). It is a protein_coding_gene from Dmel. It has 7 annotated transcripts and 7 polypeptides (4 unique). Gene sequence location is 2L:4876891..4883107. Its molecular function is described by: DNA-binding transcription factor activity; DNA binding; DNA-binding transcription activator activity, RNA polymerase II-specific; sequence-specific DNA binding; protein binding. It is involved in the biological process described with: dorsal appendage formation; regulation of transcription, DNA-templated; adult somatic muscle development; dorsal/ventral pattern formation; positive regulation of transcription elongation from RNA polymerase II promoter. 20 alleles are reported. The phenotypes of these alleles manifest in: embryonic/larval cuticle; epithelium; larva; cellular anatomical entity; supramolecular complex. The phenotypic classes of alleles include: increased mortality during development; flight defective; phenotype; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages, in stages of adults of both sexes.
Coordinates
chr2L:4876891-4883107:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
6
chr2L:4882360-4882365
-
14.57
73.08
0
Alternative 3'ss
133
chr2L:4882360-4882492
-
85.34
73.08
0
Alternative 5'ss
0
NA
-
44.55
96.72
0
Alternative 5'ss
24
chr2L:4882865-4882888
-
55.45
96.72
0
Alternative 5'ss
0
NA
-
56.55
97.63
0
Alternative 5'ss
84
chr2L:4880294-4880377
-
43.45
97.63
0
Exon Skipping
166
chr2L:4882636-4882801
-
2.16
18.8
0
Exon Skipping
95
chr2L:4880378-4880472
-
97.86
54.73
0
Intron Retention
396
chr2L:4882493-4882888
-
43.5
61.57
0
Intron Retention
742
chr2L:4880473-4881214
-
22.19
50.35
0
Intron Retention
1097
chr2L:4879197-4880293
-
18.49
80
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Rat rn6 ENSRNOG00000015456 Zfp787 1-to-2
Rat rn6 ENSRNOG00000030579 AC126572.3 1-to-2
Zebrafish danRer10 ENSDARG00000100685 CABZ01032454.2 1-to-1