Special

FBgn0001078 @ dm6

Biotype
protein_coding
Gene Symbol
ftz-f1
Description
The gene ftz transcription factor 1 is referred to in FlyBase by the symbol Dmelftz-f1 (CG4059, FBgn0001078). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is 3L:18750607..18801309. Its molecular function is described by 9 unique terms, many of which group under: binding; heterocyclic compound binding; protein binding; DNA-binding transcription factor activity; DNA-binding transcription factor activity, RNA polymerase II-specific. It is involved in the biological process described with 19 unique terms, many of which group under: metamorphosis; cell death; plasma membrane bounded cell projection morphogenesis; homeostatic process; cell maturation. 85 alleles are reported. The phenotypes of these alleles manifest in: intracellular non-membrane-bounded organelle; larval dorsal multidendritic neuron ddaD; developing material anatomical entity; parasegment 10; parasegment 2. The phenotypic classes of alleles include: phenotype; increased mortality; cell death defective; lethal - all die before end of larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages.
Coordinates
chr3L:18750607-18801309:-
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
425
chr3L:18753833-18754257
-
1.03
26.71
0
Intron Retention
500
chr3L:18754634-18755133
-
16.73
87.42
0
Intron Retention
64
chr3L:18754513-18754576
-
5.34
76.27
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000116833 NR5A2 1-to-2
Human hg38 ENSG00000136931 NR5A1 1-to-2
Human hg19 ENSG00000116833 NR5A2 1-to-2
Human hg19 ENSG00000136931 NR5A1 1-to-2
Mouse mm10 ENSMUSG00000026398 Nr5a2 1-to-2
Mouse mm10 ENSMUSG00000026751 Nr5a1 1-to-2
Mouse mm9 ENSMUSG00000026398 Nr5a2 1-to-2
Mouse mm9 ENSMUSG00000026751 Nr5a1 1-to-2
Rat rn6 ENSRNOG00000000653 Nr5a2 1-to-2
Rat rn6 ENSRNOG00000012682 Nr5a1 1-to-2
Cow bosTau6 ENSBTAG00000009017 NR5A1 1-to-2
Cow bosTau6 ENSBTAG00000009265 NR5A2 1-to-2
Chicken galGal4 ENSGALG00000001080 NR5A1 1-to-2
Chicken galGal4 ENSGALG00000002182 NR5A2 1-to-2
Chicken galGal3 ENSGALG00000001080 NR5A1 1-to-2
Chicken galGal3 ENSGALG00000002182 F1NVB5_CHICK 1-to-2
Zebrafish danRer10 ENSDARG00000023362 nr5a1b 1-to-4
Zebrafish danRer10 ENSDARG00000039116 nr5a5 1-to-4
Zebrafish danRer10 ENSDARG00000100940 nr5a2 1-to-4
Zebrafish danRer10 ENSDARG00000103176 nr5a1a 1-to-4