Special

FBgn0003053 @ dm6

Biotype
protein_coding
Gene Symbol
peb
Description
The gene pebbled is referred to in FlyBase by the symbol Dmelpeb (CG12212, FBgn0003053). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:4617564..4627206. Its molecular function is described by: RNA polymerase II regulatory region sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription factor activity. It is involved in the biological process described with 20 unique terms, many of which group under: anatomical structure homeostasis; establishment of tissue polarity; cell-cell adhesion; regulation of cell adhesion; protein localization. 45 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; stage 7 embryo; neuron projection; cell projection; rhabdomere. The phenotypic classes of alleles include: visible; partially lethal; phenotype; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages.
Coordinates
chrX:4617564-4627206:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
38.13
48.98
0
Alternative 3'ss
5
chrX:4619970-4619974
+
61.87
48.98
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000124782 RREB1 1-to-1
Human hg19 ENSG00000124782 RREB1 1-to-1
Mouse mm10 ENSMUSG00000039087 Rreb1 1-to-1
Mouse mm9 ENSMUSG00000039087 Rreb1 1-to-1
Cow bosTau6 ENSBTAG00000005980 RREB1 1-to-1
Chicken galGal4 ENSGALG00000012799 RREB1 1-to-1
Chicken galGal3 ENSGALG00000012799 RREB1 1-to-1
Zebrafish danRer10 ENSDARG00000042652 rreb1b 1-to-2
Zebrafish danRer10 ENSDARG00000063701 rreb1a 1-to-2